RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CALR3Q96L12 384 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 TDRD1Q9BXT4 1180 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 TCEAL2Q9H3H9 227 aaPredicted RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 LUC7LQ9NQ29 371 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 NLGN3Q9NZ94 848 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 HEY1Q9Y5J3 304 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 CSNK1G3Q9Y6M4 447 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 U3KQA8 63 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 IGF2RP11717 2491 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 hCG_1818297A0A087WSY0 165 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 KCNK1O00180 336 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 LZTS3O60299 673 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 JCHAINP01591 159 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 HOXC4P09017 264 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 C1SP09871 688 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 CKMT2P17540 419 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 ACP1P24666 158 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 NR2C2P49116 596 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 VAV2P52735 878 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 PTK2BQ14289 1009 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 NFATC4Q14934 902 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 PDK1Q15118 436 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 PRKD1Q15139 912 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 ARMC12Q5T9G4 340 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 ESRP1Q6NXG1 681 aaKnown RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 CCNI2Q6ZMN8 369 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 CCNYQ8ND76 341 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 ACRBPQ8NEB7 543 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 EXD1Q8NHP7 514 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 FUBP1Q96AE4 644 aaKnown RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 ZNF830Q96NB3 372 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 BAG1Q99933 345 aaPredicted RBP14.23□□□□□ -0.13
USP28-209ENST00000540925 APOOQ9BUR5 198 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 BRD8Q9H0E9 1235 aa14.23□□□□□ -0.13
USP28-209ENST00000540925 TDRD6O60522 2096 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 A0A0J9YYE9 177 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 A8MX80 341 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 C1QTNF9BB2RNN3 333 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 K7ESM1 405 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 PSMD11O00231 422 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 GCATO75600 419 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TRBC1P01850 177 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 C1QTNF9P0C862 333 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 KRT10P13645 584 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TNNT1P13805 278 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 PECAM1P16284 738 aaPredicted RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 JUNDP17535 347 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 CTNNA1P35221 906 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 THOP1P52888 689 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 KIAA1024LP59773 190 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 RPL26P61254 145 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 SKOR1P84550 965 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 ILKQ13418 452 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TFDP2Q14188 446 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 PPP2R5EQ16537 467 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 KCTD16Q68DU8 428 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 UNQ6494/PRO21346Q6UXR6 183 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 NYAP1Q6ZVC0 841 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 HSD11B1LQ7Z5J1 315 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TECPR1Q7Z6L1 1165 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TSPAN33Q86UF1 283 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 RFX6Q8HWS3 928 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 PHACTR4Q8IZ21 702 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 RCOR2Q8IZ40 523 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 RBFAQ8N0V3 343 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 PDCD6IPQ8WUM4 868 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 DTD2Q96FN9 168 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 SMIM14Q96QK8 99 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 LYSMD1Q96S90 227 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 LRRC61Q9BV99 259 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 MAK16Q9BXY0 300 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 SAE1Q9UBE0 346 aaPredicted RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 RPL26L1Q9UNX3 145 aaKnown RBP14.22□□□□□ -0.13
USP28-209ENST00000540925 OR1A2Q9Y585 309 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 CELSR3Q9NYQ7 3312 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 BPTFQ12830 3046 aa14.22□□□□□ -0.13
USP28-209ENST00000540925 GRID2IPA4D2P6 1211 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 GOLGA8CPA6NN73 597 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 H3BM21 787 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 TPP1O14773 563 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 PPP1R12AO14974 1030 aaPredicted RBP14.21□□□□□ -0.13
USP28-209ENST00000540925 AQP9O43315 295 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CST8O60676 142 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 RFPL3O75679 317 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 NEBLO76041 1014 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 ZRANB2O95218 330 aaKnown RBP eCLIP14.21□□□□□ -0.13
USP28-209ENST00000540925 PCCBP05166 539 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 PROS1P07225 676 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 ALPIP09923 528 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CYP2A6P11509 494 aaPredicted RBP14.21□□□□□ -0.13
USP28-209ENST00000540925 CDK4P11802 303 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CKMT1AP12532 417 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 TGM2P21980 687 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 NFKBIAP25963 317 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 TEAD1P28347 426 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 HNF1BP35680 557 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 ITKQ08881 620 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CAMK2BQ13554 666 aa14.21□□□□□ -0.13
USP28-209ENST00000540925 CDKN3Q16667 212 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms