RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TECRLQ5HYJ1 363 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 RPAINQ86UA6 219 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 ATP6V1E2Q96A05 226 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 CDK15Q96Q40 435 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 TM6SF2Q9BZW4 377 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 APPL1Q9UKG1 709 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 RAD54BQ9Y620 910 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 PRUNE2Q8WUY3 3088 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 TMEM114B3SHH9 223 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 ALDH2P05091 517 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 LTA4HP09960 611 aaKnown RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 ATXN1LP0C7T5 689 aaKnown RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 GFAPP14136 432 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 ALOX15P16050 662 aaPredicted RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 DSC1Q08554 894 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 KIF19Q2TAC6 998 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 BNC2Q6ZN30 1099 aaPredicted RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 KLHL32Q96NJ5 620 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 TSPAN18Q96SJ8 248 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 MRPL57Q9BQC6 102 aaKnown RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 PRDM5Q9NQX1 630 aaPredicted RBP16.95■□□□□ 0.3
USP28-208ENST00000540438 SCOCQ9UIL1 159 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 LRFN2Q9ULH4 789 aa16.95■□□□□ 0.3
USP28-208ENST00000540438 C2orf78A6NCI8 922 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 TCAF2A6NFQ2 919 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 H3BNX3 289 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CACNG3O60359 315 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 IPO13O94829 963 aaKnown RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 THRAP10827 490 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 ATP5F1P24539 256 aaPredicted RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 APLP1P51693 650 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 MTTPP55157 894 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 FBXL19Q6PCT2 694 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 AMIGO2Q86SJ2 522 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 LZTR1Q8N653 840 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 DIS3LQ8TF46 1054 aaKnown RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 C1orf21Q9H246 121 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 MID1IP1Q9NPA3 183 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 PCDHB7Q9Y5E2 793 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 MYO16Q9Y6X6 1858 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 A6NHS1 94 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 F8W8V4 182 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CDC7O00311 574 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CD3EAPO15446 510 aaKnown RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 PRAMEF12O95522 483 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 KLKB1P03952 638 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 LYNP07948 512 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 SLC2A3P11169 496 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 RHOQP17081 205 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 UGT1A6P19224 532 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 TACR2P21452 398 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 RPL10P27635 214 aaKnown RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 SH3BP2P78314 561 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CDK18Q07002 472 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 GRB7Q14451 532 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 KIAA0930Q6ICG6 404 aaPredicted RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 IYDQ6PHW0 289 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 PAQR3Q6TCH7 311 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 ISCA2Q86U28 154 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 ZNF683Q8IZ20 524 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 LILRA2Q8N149 483 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 ATP6V0D2Q8N8Y2 350 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 PIP4K2CQ8TBX8 421 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 SPPL2BQ8TCT7 592 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 ACOX2Q99424 681 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 VPS45Q9NRW7 570 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 EGFL7Q9UHF1 273 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 A0A1W2PQ45 241 aaPredicted RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 A0A1W2PQY0 241 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CCNT2O60583 730 aaKnown RBP16.94■□□□□ 0.3
USP28-208ENST00000540438 OAZ2O95190 189 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 MT-ND1P03886 318 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 TBCCQ15814 346 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 AAK1Q2M2I8 961 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 FUT10Q6P4F1 479 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 TRAF7Q6Q0C0 670 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 BTN2A3PQ96KV6 586 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CNBD2Q96M20 576 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 MARCH5Q9NX47 278 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 CLIC5Q9NZA1 410 aa16.94■□□□□ 0.3
USP28-208ENST00000540438 K7ERQ8 282 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 ATP6V1B1P15313 513 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 SP3Q02447 781 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 CREB5Q02930 508 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 TWF1Q12792 350 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 NFE2Q16621 373 aaPredicted RBP16.93■□□□□ 0.3
USP28-208ENST00000540438 SPOUT1Q5T280 376 aaKnown RBP16.93■□□□□ 0.3
USP28-208ENST00000540438 ATXN7L2Q5T6C5 722 aaPredicted RBP16.93■□□□□ 0.3
USP28-208ENST00000540438 AGAP9Q5VTM2 703 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 UMODL1-AS1Q8N2C9 162 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 RTKNQ9BST9 563 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 RNF38Q9H0F5 515 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 FBXO44Q9H4M3 255 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 TLR8Q9NR97 1041 aaKnown RBP16.93■□□□□ 0.3
USP28-208ENST00000540438 ASB1Q9Y576 335 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 MIA3Q5JRA6 1907 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 DOCK6Q96HP0 2047 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 SUPT3HB4E1H0 165 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 NIPSNAP2O75323 286 aa16.93■□□□□ 0.3
USP28-208ENST00000540438 SUPT3HO75486 399 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms