RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	ALG14	Q96F25	216 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	F2RL3	Q96RI0	385 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	CSTL1	Q9H114	145 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	RASSF1	Q9NS23	344 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	SAGE1	Q9NXZ1	904 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	CISD1	Q9NZ45	108 aa	Known RBP	4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	KIF17	Q9P2E2	1029 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	GJD2	Q9UKL4	321 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	PCDHGB5	Q9Y5G0	923 aa		4.12	□□□□□ -1.75
SMC4-223	ENST00000493695	TAF1	P21675	1872 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	LILRA5	A6NI73	299 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	IRAK2	O43187	625 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	RFPL2	O75678	378 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	ZNF10	P21506	573 aa	Predicted RBP	4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	BRWD1-AS2	P59051	145 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	CUL4B	Q13620	913 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	NEDD9	Q14511	834 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	TAF5	Q15542	800 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	EFNB3	Q15768	340 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	TIGD6	Q17RP2	521 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	GJB7	Q6PEY0	223 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	B3GNT6	Q6ZMB0	384 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	ZNF497	Q6ZNH5	498 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	NFE4	Q86UQ8	179 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	ANKRD18A	Q8IVF6	992 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	FTSJ3	Q8IY81	847 aa	Known RBP	4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	PPM1E	Q8WY54	764 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	RUBCN	Q92622	972 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	RILPL2	Q969X0	211 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	SCLT1	Q96NL6	688 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	TTC12	Q9H892	705 aa	Predicted RBP	4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	FAM118A	Q9NWS6	357 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	HDAC6	Q9UBN7	1215 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	FEM1B	Q9UK73	627 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	CLDN16	Q9Y5I7	305 aa		4.11	□□□□□ -1.75
SMC4-223	ENST00000493695	NDUFB4	O95168	129 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	NOV	P48745	357 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	ESCO2	Q56NI9	601 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	ZNF484	Q5JVG2	852 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	PDSS1	Q5T2R2	415 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	CEACAM20	Q6UY09	585 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	KCTD8	Q6ZWB6	473 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	STXBP4	Q6ZWJ1	553 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	DSEL	Q8IZU8	1212 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	CADM4	Q8NFZ8	388 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	OR10V1	Q8NGI7	309 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	SPATA22	Q8NHS9	363 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	HERVK_113	Q902F9	699 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	CDCA5	Q96FF9	252 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	FAM167B	Q9BTA0	163 aa		4.1	□□□□□ -1.75
SMC4-223	ENST00000493695	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	PLRG1	O43660	514 aa	Known RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	TNNT1	P13805	278 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	ZNF8	P17098	575 aa	Predicted RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	SRD5A1	P18405	259 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	HNRNPH1	P31943	449 aa	Known RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	HNF1B	P35680	557 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	KRT2	P35908	639 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	ACTR2	P61160	394 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	CTF1	Q16619	201 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	SOWAHA	Q2M3V2	549 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	ADCK5	Q3MIX3	580 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	ADAD2	Q8NCV1	583 aa	Known RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	GJC3	Q8NFK1	279 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	RND1	Q92730	232 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	KTI12	Q96EK9	354 aa	Predicted RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	RNFT2	Q96EX2	444 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	UBXN10	Q96LJ8	280 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	LITAF	Q99732	161 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	FSD1	Q9BTV5	496 aa		4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	PDS5A	Q29RF7	1337 aa	Known RBP	4.09	□□□□□ -1.75
SMC4-223	ENST00000493695	CNP	P09543	421 aa	Known RBP	4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	AARS	P49588	968 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	PPM1F	P49593	454 aa	Predicted RBP	4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	PITX1	P78337	314 aa	Predicted RBP	4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	BIRC3	Q13489	604 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	SLC18A3	Q16572	532 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	RGMB	Q6NW40	437 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	BBS12	Q6ZW61	710 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	PRSS45	Q7RTY3	260 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	CPO	Q8IVL8	374 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	SLC20A1	Q8WUM9	679 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	SLC32A1	Q9H598	525 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	CHODL	Q9H9P2	273 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	C17orf75	Q9HAS0	396 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	CNGB3	Q9NQW8	809 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	C1RL	Q9NZP8	487 aa		4.08	□□□□□ -1.76
SMC4-223	ENST00000493695	CCDC189	A1A4V9	331 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	EBAG9	O00559	213 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	WNT9B	O14905	357 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	NCAM2	O15394	837 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	TUBB	P07437	444 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	PCNA	P12004	261 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	HLA-DOB	P13765	273 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	GPT	P24298	496 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	TUBB4B	P68371	445 aa		4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	PPP6R3	Q5H9R7	873 aa	Predicted RBP	4.07	□□□□□ -1.76
SMC4-223	ENST00000493695	GPATCH4	Q5T3I0	446 aa	Known RBP	4.07	□□□□□ -1.76

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