RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ELMO2Q96JJ3 720 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 TRAPPC9Q96Q05 1148 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 DDX50Q9BQ39 737 aaKnown RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 HEPHQ9BQS7 1158 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 ZNF552Q9H707 407 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 KIAA1586Q9HCI6 787 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 KLHL3Q9UH77 587 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 LNPEPQ9UIQ6 1025 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 PADI1Q9ULC6 663 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 NOVA2Q9UNW9 492 aaKnown RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 TBC1D30Q9Y2I9 924 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 FARP1Q9Y4F1 1045 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 CCDC88CQ9P219 2028 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 PRSS38A1L453 326 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CCDC78A2IDD5 438 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 TMEM110-MUSTN1A8MSY1 372 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 F5H5T6 163 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 I6L893 689 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 JRKO75564 520 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 SPAG6O75602 509 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CLSTN1O94985 981 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 LTFP02788 710 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 UGT2B4P06133 528 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 INHBBP09529 407 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 LCP1P13796 627 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 GM2AP17900 193 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 IGFBP2P18065 325 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 MAN1A1P33908 653 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 PBX1P40424 430 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 UBA7P41226 1012 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 RGS7P49802 495 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 MEOX1P50221 254 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 KIAA1024LP59773 190 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 GPLD1P80108 840 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ATP1A4Q13733 1029 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ALCAMQ13740 583 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 SGSM1Q2NKQ1 1148 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ALFQ53S48 1182 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ZNF805Q5CZA5 627 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 HGSNATQ68CP4 663 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 PMF1Q6P1K2 205 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 SLC30A9Q6PML9 568 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 WDR74Q6RFH5 385 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 SPOCD1Q6ZMY3 1216 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 TMEM151BQ8IW70 566 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CBARPQ8N350 705 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 ZBTB2Q8N680 514 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 XXYLT1Q8NBI6 393 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 OR7D4Q8NG98 312 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 UBA3Q8TBC4 463 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 RNF34Q969K3 372 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 RAB7BQ96AH8 199 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CALML4Q96GE6 196 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 SCARF2Q96GP6 870 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 EPSTI1Q96J88 318 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 AK8Q96MA6 479 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 IPO9Q96P70 1041 aaKnown RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 OR6C1Q96RD1 312 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 DPYSL5Q9BPU6 564 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ZSWIM1Q9BR11 485 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 TM6SF2Q9BZW4 377 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 ZDHHC6Q9H6R6 413 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 SUDS3Q9H7L9 328 aaPredicted RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 LRRC4Q9HBW1 653 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 CNGB3Q9NQW8 809 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 AGPAT4Q9NRZ5 378 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 OGFRQ9NZT2 677 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 C5AR2Q9P296 337 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 TSPAN16Q9UKR8 245 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 FCF1Q9Y324 198 aaKnown RBP4.8□□□□□ -1.64
USP4-209ENST00000475873 NBEAL2Q6ZNJ1 2754 aa4.8□□□□□ -1.64
USP4-209ENST00000475873 HCFC1P51610 2035 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 PCM1Q15154 2024 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 DOCK4Q8N1I0 1966 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 TRBV23OR9-2A0A075B6M9 112 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 RNF212BA8MTL3 300 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 KCNU1A8MYU2 1149 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 INAFM1C9JVW0 142 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CCL21O00585 134 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 TNFRSF10CO14798 259 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 PCDH17O14917 1159 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 EIF3DO15371 548 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP4-209ENST00000475873 CAPN1P07384 714 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 PLEKP08567 350 aaPredicted RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 ANKRD34CP0C6C1 535 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 FGF5P12034 268 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 P4HA1P13674 534 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 HTR1BP28222 390 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CA7P43166 264 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 FASLGP48023 281 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 NASPP49321 788 aaPredicted RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 SERPINH1P50454 418 aaKnown RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 CLCN6P51797 869 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 YBX1P67809 324 aaKnown RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 ARF5P84085 180 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 CTBSQ01459 385 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 OTUD4Q01804 1114 aaKnown RBP4.79□□□□□ -1.64
USP4-209ENST00000475873 MTM1Q13496 603 aa4.79□□□□□ -1.64
USP4-209ENST00000475873 AUHQ13825 339 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms