RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MOXD2PA6NHM9 499 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 FGF10O15520 208 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 RECQL4O94761 1208 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 LRIG2O94898 1065 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 FTH1P02794 183 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 PTPN1P18031 435 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 GRIK4Q16099 956 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 MON1BQ7L1V2 547 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 GTF3C2Q8WUA4 911 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 PANX1Q96RD7 426 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 CPXM1Q96SM3 734 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 PARK7Q99497 189 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 IDI2Q9BXS1 227 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 DNAJB4Q9UDY4 337 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 SNX6Q9UNH7 406 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 GPC6Q9Y625 555 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 NDUFAF6Q330K2 333 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 KCTD8Q6ZWB6 473 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 LGI2Q8N0V4 545 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 LTN1O94822 1766 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RGS10O43665 173 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 IPO13O94829 963 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 ANGPTL1O95841 491 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 PRKAR1AP10644 381 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 GATAD2AQ86YP4 633 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RAB43Q86YS6 212 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 PHF12Q96QT6 1004 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 PPM1HQ9ULR3 514 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 PMF1-BGLAPU3KQ54 211 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 FAM240BA0A1B0GVZ2 78 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 AREL1O15033 823 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 CYP2C18P33260 490 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 CYP1B1Q16678 543 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 C16orf62Q7Z3J2 963 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 ZC3H7AQ8IWR0 971 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 UBR7Q8N806 425 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 NXNL1Q96CM4 212 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 NODALQ96S42 347 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RHOBTB2Q9BYZ6 727 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 CDT1Q9H211 546 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 SLC9A8Q9Y2E8 581 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 SAGE2PA6NJ88 616 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RFXANKO14593 260 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RGS20O76081 388 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 FARP2O94887 1054 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 ITGAXP20702 1163 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 RAB27AP51159 221 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 HSPA14Q0VDF9 509 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 CPSF6Q16630 551 aaKnown RBP eCLIP19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 TYSND1Q2T9J0 566 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 TRMT11Q7Z4G4 463 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 TINF2Q9BSI4 451 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 ELOVL4Q9GZR5 314 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 PCDHGC3Q9UN70 934 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 UBIAD1Q9Y5Z9 338 aa19.57■□□□□ 0.72
CCDC88B-202ENST00000356786 ERBB2P04626 1255 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 FAM131AQ6UXB0 335 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 PGLYRP2Q96PD5 576 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 SPATC1LQ9H0A9 340 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 C9JVG2 144 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 OTCP00480 354 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 NR2F6P10588 404 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 HADHBP55084 474 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CAPSQ13938 189 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 OGFOD2Q6N063 350 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 P2RY8Q86VZ1 359 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 PCDHB12Q9Y5F1 795 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 STON1Q9Y6Q2 735 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CCL15-CCL14A0A0B4J2E2 113 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 TOR1BO14657 336 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ITGA2P17301 1181 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ADSLP30566 484 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ALDH7A1P49419 539 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CCL15Q16663 113 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 C5orf22Q49AR2 442 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ZNF544Q6NX49 715 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 IL31RAQ8NI17 732 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 AP3S1Q92572 193 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 MROH8Q9H579 483 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 TNFSF13BQ9Y275 285 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 A8MX80 341 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 COL6A2P12110 1019 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CAPGP40121 348 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 MATKP42679 507 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 MAXP61244 160 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ATP6V0D1P61421 351 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CCNYL2Q5T2Q4 361 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 NBPF12Q5TAG4 269 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ZNF280DQ6N043 979 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 WDR48Q8TAF3 677 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 DNAJB3Q8WWF6 145 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 MRPS31Q92665 395 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 SENP8Q96LD8 212 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 SEMA3CQ99985 751 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 ABCG8Q9H221 673 aa19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 RGPD8O14715 1765 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-202ENST00000356786 CCDC162PA2VCL2 907 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 BCKDKO14874 412 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 FGRP09769 529 aa19.55■□□□□ 0.72
CCDC88B-202ENST00000356786 LIPEQ05469 1076 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms