RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ADAM12O43184 909 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 KIF1CO43896 1103 aaKnown RBP16.67■□□□□ 0.26
VPS54-201ENST00000272322 SUPT3HO75486 399 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 PEX11BO96011 259 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 EME1Q96AY2 570 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 TUBGCP3Q96CW5 907 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 MCMBPQ9BTE3 642 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 NSMCE4AQ9NXX6 385 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 PCDHB5Q9Y5E4 795 aa16.67■□□□□ 0.26
VPS54-201ENST00000272322 H3BMM5 538 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 RNASEH2AO75792 299 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 GJB5O95377 273 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 MMP2P08253 660 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 SLC2A3P11169 496 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 CKBP12277 381 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 CKMT2P17540 419 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 HOXC8P31273 242 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 CBLBQ13191 982 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 HNRNPDQ14103 355 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 ZNF423Q2M1K9 1284 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 TECRLQ5HYJ1 363 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 MRPL10Q7Z7H8 261 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 DBF4BQ8NFT6 615 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 OR4K2Q8NGD2 314 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 LRTOMTQ8WZ04 291 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 IMP4Q96G21 291 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 ANKRD27Q96NW4 1050 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 CDK15Q96Q40 435 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 ACOX2Q99424 681 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 PRPF18Q99633 342 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 PSMD3O43242 534 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 OR1I1O60431 355 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 ZNF623O75123 536 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 ADAMTS4O75173 837 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 GLP2RO95838 553 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 PRDX3P30048 256 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 GRIA2P42262 883 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 SLC7A2P52569 658 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 POU4F1Q01851 419 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 MANEALQ5VSG8 457 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 KIAA0930Q6ICG6 404 aaPredicted RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 C1orf50Q9BV19 199 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 PRDM16Q9HAZ2 1276 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 ZNF839A8K0R7 811 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 RHOBTB1O94844 696 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 S1PR4O95977 384 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 UQCRBP14927 111 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 PSMC3P17980 439 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 AGTR2P50052 363 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 SH3BP2P78314 561 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 LBRQ14739 615 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 MAP7D1Q3KQU3 841 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 PIWIL4Q7Z3Z4 852 aaKnown RBP16.66■□□□□ 0.26
VPS54-201ENST00000272322 ISCA2Q86U28 154 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 LPCAT1Q8NF37 534 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 ZBED2Q9BTP6 218 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 TET1Q8NFU7 2136 aa16.66■□□□□ 0.26
VPS54-201ENST00000272322 CD3EAPO15446 510 aaKnown RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 SEC24DO94855 1032 aaPredicted RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 CDK18Q07002 472 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 GRB7Q14451 532 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 RTP2Q5QGT7 225 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 METTL21CQ5VZV1 264 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 ZNF549Q6P9A3 640 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 SLC30A9Q6PML9 568 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 PAQR3Q6TCH7 311 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 USP34Q70CQ2 3546 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 DCP1BQ8IZD4 617 aaKnown RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 HMGCLL1Q8TB92 370 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 LINC01599Q8WXQ3 324 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 LPGAT1Q92604 370 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 CIB1Q99828 191 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 PDCD11Q14690 1871 aaKnown RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 PRORSD1PA6NEY8 169 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 APLP1P51693 650 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 OR4D1Q15615 310 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 DBN1Q16643 649 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 PIGGQ5H8A4 983 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 MTX3Q5HYI7 312 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 VPS33AQ96AX1 596 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 PLK2Q9NYY3 685 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 UBAP1Q9NZ09 502 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 TLR6Q9Y2C9 796 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 SPO11Q9Y5K1 396 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 MRASO14807 208 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 TIPRLO75663 272 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 CYP11A1P05108 521 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 ATN1P54259 1190 aaPredicted RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 FCGRTP55899 365 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 TWF1Q12792 350 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 TSNQ15631 228 aaKnown RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 ZNF483Q8TF39 744 aaPredicted RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 GLT1D1Q96MS3 346 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 TRIM4Q9C037 500 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 GRIP2Q9C0E4 1043 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 PRM3Q9NNZ6 103 aa16.65■□□□□ 0.26
VPS54-201ENST00000272322 ZFP37Q9Y6Q3 630 aaPredicted RBP16.65■□□□□ 0.26
VPS54-201ENST00000272322 C15orf38-AP3S2A0A0A6YYH1 394 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 CDC7O00311 574 aa16.64■□□□□ 0.25
VPS54-201ENST00000272322 LDB2O43679 373 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms