RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C11orf87Q6NUJ2 197 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 RTL10Q7L3V2 364 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 AMIGO2Q86SJ2 522 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 TRIML1Q8N9V2 468 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 Q8NA96 180 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 CLRN3Q8NCR9 226 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 ENGASEQ8NFI3 743 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SSC4DQ8WTU2 575 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 HMGB4Q8WW32 186 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 TFAP2BQ92481 460 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 HOXB13Q92826 284 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 TRIM63Q969Q1 353 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SGCZQ96LD1 299 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF578Q96N58 590 aaPredicted RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 MYOCQ99972 504 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 NACAP1Q9BZK3 213 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 API5Q9BZZ5 524 aaKnown RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 LRRCC1Q9C099 1032 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 NAPBQ9H115 298 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 GSTO2Q9H4Y5 243 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 INTS13Q9NVM9 706 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 MIOSQ9NXC5 875 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 DKK3Q9UBP4 350 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SLC9A2Q9UBY0 812 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SCOCQ9UIL1 159 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA9Q9Y5G4 932 aaKnown RBP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA8Q9Y5G5 932 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA7Q9Y5G6 932 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA6Q9Y5G7 932 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGA3Q9Y5H0 932 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 MYLKQ15746 1914 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 CEP192Q8TEP8 1941 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 SF3B1O75533 1304 aaKnown RBP eCLIP4.65□□□□□ -1.67
LINC00540-201ENST00000611481 CNTNAP2Q9UHC6 1331 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 NBEAL1Q6ZS30 2694 aa4.65□□□□□ -1.67
LINC00540-201ENST00000611481 PDZD2O15018 2839 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 FN1P02751 2386 aaKnown RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 A0A1W2PS29 197 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ESYT2A0FGR8 921 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ARHGEF37A1IGU5 675 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ANTXRLA6NF34 631 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 XPOTO43592 962 aaKnown RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 TLR5O60602 858 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CER1O95813 267 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 IGKV2-30P06310 120 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF883P0CG24 379 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 RNF224P0DH78 156 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 VDRP11473 427 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 SFTPCP11686 197 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 GNSP15586 552 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 FPR1P21462 350 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 TNFAIP3P21580 790 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 SFPQP23246 707 aaKnown RBP eCLIP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ELF1P32519 619 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 MLH1P40692 756 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 MATKP42679 507 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 GRK6P43250 576 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 SLC26A2P50443 739 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 RUNX3Q13761 415 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 TRIM14Q14142 442 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 PTPRRQ15256 657 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 HLA-BQ31612 363 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 STXBP5Q5T5C0 1151 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CFAP161Q6P656 301 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 MAATS1Q7Z4T9 603 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ELMOD1Q8N336 334 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 DEPTORQ8TB45 409 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 BPIFB1Q8TDL5 484 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CDHR1Q96JP9 859 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 PGBD1Q96JS3 809 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 FAM20AQ96MK3 541 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 SEMA3CQ99985 751 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 GCOM2Q9BZD3 368 aaPredicted RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 DPH1Q9BZG8 443 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 GPR88Q9GZN0 384 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 RSPH9Q9H1X1 276 aaPredicted RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 EBF3Q9H4W6 596 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 FAM124BQ9H5Z6 455 aaPredicted RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 HPS4Q9NQG7 708 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ASAH2Q9NR71 780 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 GKN1Q9NS71 199 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CACNG4Q9UBN1 327 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ITGB1BP2Q9UKP3 347 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 NOL7Q9UMY1 257 aaKnown RBP4.64□□□□□ -1.67
LINC00540-201ENST00000611481 LRCH1Q9Y2L9 728 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGB3Q9Y5G1 929 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHGB2Q9Y5G2 931 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 ACTL7AQ9Y615 435 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CDY1Q9Y6F8 540 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 CRYBG3Q68DQ2 2970 aa4.64□□□□□ -1.67
LINC00540-201ENST00000611481 KNL1Q8NG31 2342 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 KIAA1549LQ6ZVL6 1849 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 MYO16Q9Y6X6 1858 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 CDHR4A6H8M9 788 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ARL5CA6NH57 179 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 SNX2O60749 519 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ENDOD1O94919 500 aa4.63□□□□□ -1.67
LINC00540-201ENST00000611481 ZRANB2O95218 330 aaKnown RBP eCLIP4.63□□□□□ -1.67
LINC00540-201ENST00000611481 AGR2O95994 175 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms