RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CLDN16Q9Y5I7 305 aa3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 GREB1LQ9C091 1923 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-212ENST00000474059 CACNA1FO60840 1977 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 H0Y3Z8 333 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 NDUFS7O75251 213 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 CBX6O95503 412 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 TFRCP02786 760 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 GJC1P36383 396 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 MAPK9P45984 424 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 PMP22Q01453 160 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 RELQ04864 619 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 PPIGQ13427 754 aaKnown RBP eCLIP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 CUL4BQ13620 913 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 SYT16Q17RD7 645 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 FBXO43Q4G163 708 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 DCAF6Q58WW2 860 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 DGAT2L7PQ6IED9 249 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 CYP26C1Q6V0L0 522 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 NOTCH2NLQ7Z3S9 236 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 NFE4Q86UQ8 179 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 SFR1Q86XK3 245 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 OR6Y1Q8NGX8 325 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 SPPL3Q8TCT6 385 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 CSGALNACT1Q8TDX6 532 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 CREB3L4Q8TEY5 395 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 LGALS12Q96DT0 336 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 TMEM19Q96HH6 336 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 UBXN10Q96LJ8 280 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 ZNF599Q96NL3 588 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 TRAPPC9Q96Q05 1148 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 YME1L1Q96TA2 773 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 PYGO2Q9BRQ0 406 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 DCTN5Q9BTE1 182 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 MMTAG2Q9BU76 263 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 TAF1DQ9H5J8 278 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 ELAC1Q9H777 363 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 ANKRD10Q9NXR5 420 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 RRN3Q9NYV6 651 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 GTF2A1LQ9UNN4 478 aa3.25□□□□□ -1.89
CCDC88A-212ENST00000474059 A0A1W2PS18 150 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 OR6C68A6NDL8 312 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 EIF3FO00303 357 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 CSF1P09603 554 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 PATE4P0C8F1 98 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 ADD2P35612 726 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 LIFRP42702 1097 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 AP5B1Q2VPB7 878 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 KRTAP13-3Q3SY46 172 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 AMZ1Q400G9 498 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 FBXO47Q5MNV8 452 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 ANKRD45Q5TZF3 282 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 SHFQ7M4L6 423 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 HERC6Q8IVU3 1022 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 ODF3L1Q8IXM7 274 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 AFG1LQ8WV93 481 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 OTULINQ96BN8 352 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 C3orf49Q96BT1 292 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 ZNF524Q96C55 264 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 ZSCAN31Q96LW9 406 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 C17orf77Q96MU5 243 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 BARHL1Q9BZE3 327 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 TLR8Q9NR97 1041 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 NDUFAF4Q9P032 175 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 KCND3Q9UK17 655 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 FEM1BQ9UK73 627 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 C19orf53Q9UNZ5 99 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 VDAC3Q9Y277 283 aa3.24□□□□□ -1.89
CCDC88A-212ENST00000474059 LILRA5A6NI73 299 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 E7EVH7 732 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 NCAM2O15394 837 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SEPT4O43236 478 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 KRT38O76015 456 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 PYGLP06737 847 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 ITGAXP20702 1163 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 CD72P21854 359 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SERPINA4P29622 427 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 AARSP49588 968 aaKnown RBP eCLIP3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 KRTAP12-2P59991 146 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 GOLGA8FQ08AF8 430 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SREBF2Q12772 1141 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 IL13RA2Q14627 380 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 TAF12Q16514 161 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 ADCK5Q3MIX3 580 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 ALFQ53S48 1182 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 RUNDC3AQ59EK9 446 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 GFRALQ6UXV0 394 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SH2D6Q7Z4S9 175 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 ZC3HC1Q86WB0 502 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 C2CD5Q86YS7 1000 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SFTPA2Q8IWL1 248 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 KLHDC9Q8NEP7 349 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SLC24A4Q8NFF2 622 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 GRAPLQ8TC17 118 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 THAP4Q8WY91 577 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 SDCCAG3Q96C92 435 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 ATOH8Q96SQ7 321 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 TWSG1Q9GZX9 223 aa3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 LRRFIP2Q9Y608 721 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-212ENST00000474059 PMS2P5A8MQ11 134 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms