RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TBC1D25Q3MII6 688 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 GLRA4Q5JXX5 417 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 MPP7Q5T2T1 576 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ERMARDQ5T6L9 678 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 FAXCQ5TGI0 409 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SHEQ5VZ18 495 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ZCCHC12Q6PEW1 402 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CLEC2AQ6UVW9 174 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 DPY19L3Q6ZPD9 716 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 MARK2Q7KZI7 788 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 TAOK1Q7L7X3 1001 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CAND1Q86VP6 1230 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 HOOK3Q86VS8 718 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ZNF280BQ86YH2 543 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 WDR49Q8IV35 697 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 UNC5CLQ8IV45 518 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 WDR63Q8IWG1 891 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 FAM217AQ8IXS0 508 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SLC15A3Q8IY34 581 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 C17orf53Q8N3J3 647 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 NANOGP1Q8N7R0 232 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 RTL3Q8N8U3 475 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 TERB1Q8NA31 727 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 IL31RAQ8NI17 732 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SGF29Q96ES7 293 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 HMCESQ96FZ2 354 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 ARL5BQ96KC2 179 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CMTM3Q96MX0 182 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 NUDCD1Q96RS6 583 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SH3GL2Q99962 352 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 DDX50Q9BQ39 737 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 NFKBIZQ9BYH8 718 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 KRTAP1-5Q9BYS1 174 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CIPCQ9C0C6 399 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SMARCAD1Q9H4L7 1026 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 XKR8Q9H6D3 395 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 C17orf75Q9HAS0 396 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 BRF2Q9HAW0 419 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 GDAP2Q9NXN4 497 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 TAB2Q9NYJ8 693 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 IGSF9Q9P2J2 1179 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 RCOR1Q9UKL0 485 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 PSME2Q9UL46 239 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 OGDHLQ9ULD0 1010 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 SCAF8Q9UPN6 1271 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 LIPT1Q9Y234 373 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 PCDHGA1Q9Y5H4 931 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 CAPN7Q9Y6W3 813 aa4.97□□□□□ -1.61
CCDC88A-210ENST00000468534 COL15A1P39059 1388 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 ACOD1A6NK06 481 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 POC1B-GALNT4F8VUJ3 575 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 H0YCG3 227 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 AP4M1O00189 453 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 O00370 1275 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 SCAMP1O15126 338 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 PHGDHO43175 533 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 DIAPH2O60879 1101 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 REC8O95072 547 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 METTL18O95568 372 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 TPOP07202 933 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 PRG2P13727 222 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 PIP4K2AP48426 406 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 PRKAA2P54646 552 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 UCP3P55916 312 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 ACTR2P61160 394 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 PSMC6P62333 389 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 TRA2BP62995 288 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 HTRA4P83105 476 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 TFAP4Q01664 338 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 MYO1EQ12965 1108 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 CHIT1Q13231 466 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 ITGA7Q13683 1181 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 LAMB3Q13751 1172 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 GALNT3Q14435 633 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 TRIP6Q15654 476 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 CNGA2Q16280 664 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 BAK1Q16611 211 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 HADHQ16836 314 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 LY6KQ17RY6 165 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 TDRD12Q587J7 1177 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 EMC10Q5UCC4 262 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 KLHL24Q6TFL4 600 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 ISLR2Q6UXK2 745 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 H1FNTQ75WM6 255 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 DIS3L2Q8IYB7 885 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM9CQ8IZT9 166 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 CNTROBQ8N137 903 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 GALNT4Q8N4A0 578 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 LILRB4Q8NHJ6 448 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 OSCP1Q8WVF1 389 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 CUL5Q93034 780 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 RAB7BQ96AH8 199 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 SPACA9Q96E40 222 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 C19orf60Q96EN9 201 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 SIPA1Q96FS4 1042 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 ADAD1Q96M93 576 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 CTAGE1Q96RT6 745 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 GDF15Q99988 308 aa4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 NSRP1Q9H0G5 558 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-210ENST00000468534 DPH5Q9H2P9 285 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms