RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 AKAP13Q12802 2813 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ANKRD36A6QL64 1941 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 CXorf51AA0A1B0GTR3 108 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 H0Y8X5 98 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 FGF10O15520 208 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PPFIA2O75334 1257 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ZNF821O75541 412 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PCDH8O95206 1070 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 KRT1P04264 644 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 KRT7P08729 469 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 HSD17B3P37058 310 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 SSR1P43307 286 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 RPL21P46778 160 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 CCNHP51946 323 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 TPI1P60174 286 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PTK6Q13882 451 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 STAT4Q14765 748 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 HADHQ16836 314 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 INAVAQ3KP66 663 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 KCNT1Q5JUK3 1230 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PIP5KL1Q5T9C9 394 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 NEK5Q6P3R8 708 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 FBXL19Q6PCT2 694 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 DRICH1Q6PGQ1 229 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ZDHHC24Q6UX98 284 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 LEKR1Q6ZMV7 388 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ERN2Q76MJ5 926 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 TMC3Q7Z5M5 1100 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 TRIM69Q86WT6 500 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 C1orf54Q8WWF1 131 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ISG20Q96AZ6 181 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ARRDC3Q96B67 414 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 HDAC8Q9BY41 377 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 TRIM31Q9BZY9 425 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 DHX35Q9H5Z1 703 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 WHRNQ9P202 907 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 HECAQ9UBI9 543 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 MTRF1LQ9UGC7 380 aaKnown RBP12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PCSK1NQ9UHG2 260 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ADAM21Q9UKJ8 722 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 PCOLCE2Q9UKZ9 415 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 AP4E1Q9UPM8 1137 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 NEU3Q9UQ49 428 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 DMTF1Q9Y222 760 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 EFR3BQ9Y2G0 817 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 SNX24Q9Y343 169 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 ACTL7AQ9Y615 435 aa12.59□□□□□ -0.39
SHMT2-214ENST00000554604 SHROOM3Q8TF72 1996 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 A0A1W2PQU0 124 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 PRAMEF26H0Y7S4 382 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 TLR4O00206 839 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SLC31A1O15431 190 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 KDELR3O43731 214 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 PRPSAP2O60256 369 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 MAGEC1O60732 1142 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 RNGTTO60942 597 aaKnown RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 TJP3O95049 919 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 TRIM16O95361 564 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 GAS8O95995 478 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 WNT1P04628 370 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SPINK2P20155 84 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 ITGB7P26010 798 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 HTR7P34969 479 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 GRK6P43250 576 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 NEK3P51956 506 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 YBEYP58557 167 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 TAS2R38P59533 333 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SNRPD1P62314 119 aaKnown RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 IL9RQ01113 521 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SLC25A11Q02978 314 aaKnown RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 PPP1R7Q15435 360 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 UAP1Q16222 522 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 ZNF423Q2M1K9 1284 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 PARP15Q460N3 678 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SPOCD1Q6ZMY3 1216 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 MFSD2AQ8NA29 543 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 ATL2Q8NHH9 583 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 ART4Q93070 314 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 ELF4Q99607 663 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 CDC6Q99741 560 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 SCNM1Q9BWG6 230 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 GPATCH2LQ9NWQ4 482 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 USP24Q9UPU5 2620 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 APOBEC2Q9Y235 224 aaKnown RBP12.58□□□□□ -0.4
SHMT2-214ENST00000554604 WASF2Q9Y6W5 498 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 PTPRBP23467 1997 aa12.58□□□□□ -0.4
SHMT2-214ENST00000554604 hCG_1818297A0A087WSY0 165 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 A0A1W2PR77 199 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 C10orf142B7Z368 130 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 RASA4BC9J798 803 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 EEF2KO00418 725 aaKnown RBP12.57□□□□□ -0.4
SHMT2-214ENST00000554604 WNT9AO14904 365 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 RASA4O43374 803 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 HYAL3O43820 417 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-214ENST00000554604 PCDHGA12O60330 932 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 CBFA2T3O75081 653 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 LRCH4O75427 683 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 POP4O95707 220 aaKnown RBP12.57□□□□□ -0.4
SHMT2-214ENST00000554604 CD160O95971 181 aa12.57□□□□□ -0.4
SHMT2-214ENST00000554604 TOP3BO95985 862 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms