RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 NPHS1O60500 1241 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 STC2O76061 302 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 SOD2P04179 222 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 PRDX6P30041 224 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 KPNA2P52292 529 aaKnown RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 TECRLQ5HYJ1 363 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ARHGAP24Q8N264 748 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 ZNF483Q8TF39 744 aaPredicted RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 SCYL1Q96KG9 808 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 NSMCE3Q96MG7 304 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 NUDCD1Q96RS6 583 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 STOML2Q9UJZ1 356 aa13.86□□□□□ -0.19
RTN3-210ENST00000540798 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.86□□□□□ -0.19
RTN3-210ENST00000540798 GRID2O43424 1007 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 CLDN11O75508 207 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 TM7SF2O76062 418 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 CR2P20023 1033 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 MPSTP25325 297 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 CALRP27797 417 aaKnown RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 PGM1P36871 562 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 SERPINB5P36952 375 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 SLC26A3P40879 764 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 RPL14P50914 215 aaKnown RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 PFKPQ01813 784 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 DSG1Q02413 1049 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 KDSRQ06136 332 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 RFTN1Q14699 578 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 ARL13AQ5H913 290 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 ITFG2Q969R8 447 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 HDAC10Q969S8 669 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 ZNF689Q96CS4 500 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 TSPAN17Q96FV3 270 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 ZNF512Q96ME7 567 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 KLF16Q9BXK1 252 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 ILVBLA1L0T0 632 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 NSUN2Q08J23 767 aaKnown RBP eCLIP13.85□□□□□ -0.19
RTN3-210ENST00000540798 PRKAA1Q13131 559 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 KHDC1Q4VXA5 237 aaKnown RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 HECTD2Q5U5R9 776 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 TLDC1Q6P9B6 456 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 TMC7Q7Z402 723 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 OR7D4Q8NG98 312 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 BRSK1Q8TDC3 778 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 DCLRE1BQ9H816 532 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 RC3H2Q9HBD1 1191 aaKnown RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 MARCH4Q9P2E8 410 aaPredicted RBP13.85□□□□□ -0.19
RTN3-210ENST00000540798 TBC1D30Q9Y2I9 924 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 KCTD3Q9Y597 815 aa13.85□□□□□ -0.19
RTN3-210ENST00000540798 HDAC3O15379 428 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 GCKP35557 465 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SGSHP51688 502 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 NAGLUP54802 743 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ASPHQ12797 758 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 C1orf53Q5VUE5 145 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 CNKSR3Q6P9H4 555 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SETD3Q86TU7 594 aaPredicted RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 DENND1CQ8IV53 801 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 TXNDC5Q8NBS9 432 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 IFT43Q96FT9 208 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 NDNQ99608 321 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 HERC2P3Q9BVR0 1158 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 VTI1BQ9UEU0 232 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SEPT3Q9UH03 358 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SLCO1B7G3V0H7 640 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 DIAPH2O60879 1101 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 PIGNO95427 931 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SERPINF2P08697 491 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 CCR10P46092 362 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 RPS24P62847 133 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 NAA25Q14CX7 972 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ACSBG2Q5FVE4 666 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 AP1ARQ63HQ0 302 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 DEFB128Q7Z7B8 93 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 WDR60Q8WVS4 1066 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 MOCOSQ96EN8 888 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 PPP1R12CQ9BZL4 782 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ZNF385DQ9H6B1 395 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.84□□□□□ -0.193e-7■■■■□ 22.8
RTN3-210ENST00000540798 TRPM5Q9NZQ8 1165 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ZDHHC2Q9UIJ5 367 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 CORO1CQ9ULV4 474 aaPredicted RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 YIPF1Q9Y548 306 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 F8W8V4 182 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ZBTB14O43829 449 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 NDST3O95803 873 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 LTA4HP09960 611 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 ATP5F1P24539 256 aaPredicted RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 CORO1AP31146 461 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 PPP3CCP48454 512 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SLC12A2P55011 1212 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 KPNB1Q14974 876 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 FAM83EQ2M2I3 478 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 PTAR1Q7Z6K3 402 aaPredicted RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 SLC39A11Q8N1S5 342 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 SPATA6LQ8N4H0 392 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 CNDP1Q96KN2 507 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 OR52B2Q96RD2 323 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 TACO1Q9BSH4 297 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 RNF38Q9H0F5 515 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ETAA1Q9NY74 926 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms