RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DCXO43602 365 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 UBOX5O94941 541 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RAB30Q15771 203 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RPAINQ86UA6 219 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 DAW1Q8N136 415 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ACMSDQ8TDX5 336 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 TPD52L3Q96J77 140 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 TEPSINQ96N21 525 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 TMEM175Q9BSA9 504 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ARHGEF4Q9NR80 690 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 ADPRHL2Q9NX46 363 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RABGEF1Q9UJ41 708 aa14.18□□□□□ -0.14
USP3-204ENST00000540797 RPP40O75818 363 aaKnown RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 KCNA3P22001 575 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 GJA9P57773 515 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 KLC1Q07866 573 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 RGS1Q08116 209 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CBX2Q14781 532 aaPredicted RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 TBCELQ5QJ74 424 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 HGSNATQ68CP4 663 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 RIN3Q8TB24 985 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 AUTS2Q8WXX7 1259 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 RNF39Q9H2S5 420 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 KCND1Q9NSA2 647 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 GULP1Q9UBP9 304 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 TLL2Q9Y6L7 1015 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 SNAI1O95863 264 aaPredicted RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 F2P00734 622 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 PIGRP01833 764 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 SHBGP04278 402 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 PABPC1P11940 636 aaKnown RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 NEK3P51956 506 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 KLHL35Q6PF15 583 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 PAGE2Q7Z2X7 111 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 SNX32Q86XE0 403 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 ZNF296Q8WUU4 475 aaPredicted RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 THAP11Q96EK4 314 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 MINDY3Q9H8M7 445 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 ADAMTSL3P82987 1691 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 EPN2O95208 641 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 POP4O95707 220 aaKnown RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 PSMA3P25788 255 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 PRKAG1P54619 331 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 SPATA6LQ8N4H0 392 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 POU5F2Q8N7G0 328 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CNBD2Q96M20 576 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CLDND1Q9NY35 253 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CLIC5Q9NZA1 410 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 YJEFN3A6XGL0 299 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 E7ENQ6 273 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 GCATO75600 419 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 VNN1O95497 513 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CNPP09543 421 aaKnown RBP14.17□□□□□ -0.14
USP3-204ENST00000540797 TNFRSF8P28908 595 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 CCR4P51679 360 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 DSC2Q02487 901 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 GRSF1Q12849 480 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP3-204ENST00000540797 FOXR1Q6PIV2 292 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 TXNDC11Q6PKC3 985 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 PYROXD2Q8N2H3 581 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 SCAMP5Q8TAC9 235 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 GPR88Q9GZN0 384 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 ACSS3Q9H6R3 686 aa14.17□□□□□ -0.14
USP3-204ENST00000540797 A0A1W2PRU2 124 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 PEX11AO75192 247 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 CDK14O94921 469 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 S100A5P33763 92 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SCTRP47872 440 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 GRIA4P48058 902 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 IRX1P78414 480 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 PLA2G4EQ3MJ16 856 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ANKS1BQ7Z6G8 1248 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 MICU2Q8IYU8 434 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ZNF786Q8N393 782 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ASZ1Q8WWH4 475 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 CLIP3Q96DZ5 547 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 HMCESQ96FZ2 354 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SUSD3Q96L08 255 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 LPIN3Q9BQK8 851 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ABCG8Q9H221 673 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 MAPRE3Q9UPY8 281 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 REXO2Q9Y3B8 237 aaKnown RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 HS6ST1O60243 411 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 WDR47O94967 919 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 OTCP00480 354 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SLC10A3P09131 477 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SERPINB3P29508 390 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ZNHIT3Q15649 155 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 FAM187BQ17R55 369 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 DNAJB7Q7Z6W7 309 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 DHFR2Q86XF0 187 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 RTL3Q8N8U3 475 aaKnown RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 QKIQ96PU8 341 aaKnown RBP eCLIP14.16□□□□□ -0.141e-15■■■■■ 29.2
USP3-204ENST00000540797 ACE2Q9BYF1 805 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 USE1Q9NZ43 259 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 LIMD1Q9UGP4 676 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 FCF1Q9Y324 198 aaKnown RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 SNX10Q9Y5X0 201 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 C2CD4BA6NLJ0 364 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ALOX15BO15296 676 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms