RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 BTN2A2Q8WVV5 523 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 GATA6Q92908 595 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 MRFAP1L1Q96HT8 127 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 TBATAQ96M53 351 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 TMEM121BQ9BXQ6 578 aaPredicted RBP20.77■□□□□ 0.92
VPS28-206ENST00000526734 SCUBE2Q9NQ36 999 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 EVA1BQ9NVM1 165 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 DNAJC28Q9NX36 388 aa20.77■□□□□ 0.92
VPS28-206ENST00000526734 CHD8Q9HCK8 2581 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 TMEM110-MUSTN1A8MSY1 372 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 HTRA2O43464 458 aaPredicted RBP20.76■□□□□ 0.91
VPS28-206ENST00000526734 MFSD11O43934 449 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 C6P13671 934 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 CES1P23141 567 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 PEX5P50542 639 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 LRRC14Q15048 493 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 ST3GAL2Q16842 350 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 ATP13A4Q4VNC1 1196 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 DPPA4Q7L190 304 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 TMPRSS7Q7RTY8 843 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 CCDC170Q8IYT3 715 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 TEX26Q8N6G2 289 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 TC2NQ8N9U0 490 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 OR4C6Q8NH72 309 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 ZNF830Q96NB3 372 aaPredicted RBP20.76■□□□□ 0.91
VPS28-206ENST00000526734 TSGA13Q96PP4 275 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 KCTD5Q9NXV2 234 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 CSNK1G3Q9Y6M4 447 aa20.76■□□□□ 0.91
VPS28-206ENST00000526734 LZTS3O60299 673 aaPredicted RBP20.75■□□□□ 0.91
VPS28-206ENST00000526734 SDC3O75056 442 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 RFPL3O75679 317 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 CKMT2P17540 419 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 KDELR1P24390 212 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 CCNCP24863 283 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 LIG3P49916 1009 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 HADHBP55084 474 aaKnown RBP20.75■□□□□ 0.91
VPS28-206ENST00000526734 MACC1Q6ZN28 852 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 ZSWIM9Q86XI8 627 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 ATL2Q8NHH9 583 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 MAML1Q92585 1016 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 DUSP23Q9BVJ7 150 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 POLR1EQ9GZS1 481 aaKnown RBP20.75■□□□□ 0.91
VPS28-206ENST00000526734 USP29Q9HBJ7 922 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 NLGN3Q9NZ94 848 aa20.75■□□□□ 0.91
VPS28-206ENST00000526734 GOLGA8CPA6NN73 597 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 MATN3O15232 486 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 CPP00450 1065 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 KRT10P13645 584 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 ITIH2P19823 946 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 CYLC1P35663 651 aaPredicted RBP20.74■□□□□ 0.91
VPS28-206ENST00000526734 ACADVLP49748 655 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 MTM1Q13496 603 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 IRF4Q15306 451 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 SMAD1Q15797 465 aaKnown RBP20.74■□□□□ 0.91
VPS28-206ENST00000526734 PROX2Q3B8N5 592 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 CCNI2Q6ZMN8 369 aaPredicted RBP20.74■□□□□ 0.91
VPS28-206ENST00000526734 CPNE8Q86YQ8 564 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 SLC25A45Q8N413 288 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 PGBD5Q8N414 524 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 RNF157Q96PX1 679 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 DDX56Q9NY93 547 aaKnown RBP20.74■□□□□ 0.91
VPS28-206ENST00000526734 NCKIPSDQ9NZQ3 722 aa20.74■□□□□ 0.91
VPS28-206ENST00000526734 DOCK9Q9BZ29 2069 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 LRRD1A4D1F6 860 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 C1QTNF9BB2RNN3 333 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 SCAMP1O15126 338 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 LCA5LO95447 670 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 ELFN1P0C7U0 828 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 C1QTNF9P0C862 333 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 ZFXP17010 805 aaPredicted RBP20.73■□□□□ 0.91
VPS28-206ENST00000526734 ACP1P24666 158 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 HTR1BP28222 390 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 ZNF75DP51815 510 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 WSCD2Q2TBF2 565 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 ODF2Q5BJF6 829 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 ALG1LQ6GMV1 187 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 TMPRSS12Q86WS5 348 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 RHOT1Q8IXI2 618 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 NDUFAF2Q8N183 169 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 PQLC3Q8N755 202 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 KDF1Q8NAX2 398 aaPredicted RBP20.73■□□□□ 0.91
VPS28-206ENST00000526734 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.73■□□□□ 0.91
VPS28-206ENST00000526734 HDAC11Q96DB2 347 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 PANX2Q96RD6 677 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 NOD2Q9HC29 1040 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 SPASTQ9UBP0 616 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 PHTF1Q9UMS5 762 aa20.73■□□□□ 0.91
VPS28-206ENST00000526734 SIGLEC6O43699 453 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 NEBLO76041 1014 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 CYP2A6P11509 494 aaPredicted RBP20.72■□□□□ 0.91
VPS28-206ENST00000526734 JUNDP17535 347 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 CA4P22748 312 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 MAGEA1P43355 309 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 BLKP51451 505 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 RALGDSQ12967 914 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 SPA17Q15506 151 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 LIPIQ6XZB0 460 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 FAM181AQ8N9Y4 354 aa20.72■□□□□ 0.91
VPS28-206ENST00000526734 ZNF548Q8NEK5 533 aaPredicted RBP20.72■□□□□ 0.91
VPS28-206ENST00000526734 RAPGEF5Q92565 580 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms