RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 BBIP1A8MTZ0 92 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 CBX4O00257 560 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PPEF2O14830 753 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PAGE1O75459 146 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ARIH2O95376 493 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 KRT8P05787 483 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PIRTP0C851 137 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PGS1Q32NB8 556 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TTLL9Q3SXZ7 439 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RAB6CQ53S08 254 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM63BQ5T3F8 832 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 BROXQ5VW32 411 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SYPL2Q5VXT5 272 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 GLT6D1Q7Z4J2 308 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ZCCHC7Q8N3Z6 543 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 NRG4Q8WWG1 115 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ZMAT2Q96NC0 199 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PCYT2Q99447 389 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RHOBTB2Q9BYZ6 727 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RAB6CQ9H0N0 254 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 FBXO44Q9H4M3 255 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 KCNK13Q9HB14 408 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TMPRSS4Q9NRS4 437 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SFMBT1Q9UHJ3 866 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TCAF1Q9Y4C2 921 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 IPPQ9Y573 584 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 CCDC189A1A4V9 331 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 NPHS1O60500 1241 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 IDO1P14902 403 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ITGB6P18564 788 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RABGGTBP53611 331 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 CTXN3Q4LDR2 81 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 MOB2Q70IA6 237 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SZRD1Q7Z422 152 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 MILR1Q7Z6M3 343 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TAGAPQ8N103 731 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RORBQ92753 470 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PGLYRP2Q96PD5 576 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 KLHL5Q96PQ7 755 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 DHRS4Q9BTZ2 278 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ADGRE3Q9BY15 652 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ADAMTS6Q9UKP5 1117 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM32AQ9Y421 112 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM247A6NEH6 219 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 NEMP2A6NFY4 417 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 C9JVG2 144 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 DLGAP3O95886 979 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 EGFRP00533 1210 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 IL1BP01584 269 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF280AP59817 542 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RPL26P61254 145 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 MRPS15P82914 257 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 INCA1Q0VD86 236 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 VEPH1Q14D04 833 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 HERC3Q15034 1050 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 FSCN1Q16658 493 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PITRM1Q5JRX3 1037 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 GPR158Q5T848 1215 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 IL23RQ5VWK5 629 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TTC23Q5W5X9 447 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 KLHDC10Q6PID8 442 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PAOXQ6QHF9 649 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 LDB1Q86U70 411 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PKP2Q99959 881 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SEMA3CQ99985 751 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 TINF2Q9BSI4 451 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF556Q9HAH1 456 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ZDHHC2Q9UIJ5 367 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 COPG1Q9Y678 874 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 A0A1B0GUL6 1792 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SF3B1O75533 1304 aaKnown RBP eCLIP8.45□□□□□ -1.061e-8■■■■■ 160.4
LIMCH1-216ENST00000512820 H6PDO95479 791 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 RHOCP08134 193 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PCNAP12004 261 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 MSH3P20585 1137 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 IL2P60568 153 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 BEX3Q00994 111 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC39A12Q504Y0 691 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ADGRG6Q86SQ4 1221 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PLD6Q8N2A8 252 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 ATG16L2Q8NAA4 619 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PTCD2Q8WV60 388 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 LPPQ93052 612 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC9A7Q96T83 725 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 PARVBQ9HBI1 364 aa8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 GPBP1L1Q9HC44 474 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 EXOSC4Q9NPD3 245 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-216ENST00000512820 YJEFN3A6XGL0 299 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CCNA2P20248 432 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CCNCP24863 283 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 EIF2B2P49770 351 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MTTPP55157 894 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DEFA1P59665 94 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DEFA3P59666 94 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 LILRA4P59901 499 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PLCL1Q15111 1095 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 TIGD2Q4W5G0 525 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 RNF219Q5W0B1 726 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM26Q6ZUK4 368 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CDYL2Q8N8U2 506 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms