RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	STRADB	Q9C0K7	418 aa		13.82	□□□□□ -0.2
SAMM50-204	ENST00000493161	PCDH12	Q9NPG4	1184 aa		13.82	□□□□□ -0.2
SAMM50-204	ENST00000493161	KL	Q9UEF7	1012 aa		13.82	□□□□□ -0.2
SAMM50-204	ENST00000493161	NOCT	Q9UK39	431 aa	Known RBP	13.82	□□□□□ -0.2
SAMM50-204	ENST00000493161	MFHAS1	Q9Y4C4	1052 aa		13.82	□□□□□ -0.2
SAMM50-204	ENST00000493161	C2CD4B	A6NLJ0	364 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	NVL	O15381	856 aa	Known RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	IGSF6	O95976	241 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	PCCB	P05166	539 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	LIPC	P11150	499 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	PRKCSH	P14314	528 aa	Predicted RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	UCHL3	P15374	230 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	CHRNB2	P17787	502 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	ZFP36L1	Q07352	338 aa	Known RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	TBR1	Q16650	682 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	GKN2	Q86XP6	184 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	CCNJL	Q8IV13	435 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	HTR3C	Q8WXA8	447 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	CENPI	Q92674	756 aa	Predicted RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	USP7	Q93009	1102 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	TMEM74	Q96NL1	305 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	ARHGAP9	Q9BRR9	750 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	TUBGCP2	Q9BSJ2	902 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	MRPL40	Q9NQ50	206 aa	Known RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	PCDHGA4	Q9Y5G9	962 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	RNF215	Q9Y6U7	377 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	COL12A1	Q99715	3063 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	UBR5	O95071	2799 aa	Predicted RBP	13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	NAV2	Q8IVL1	2488 aa		13.81	□□□□□ -0.2
SAMM50-204	ENST00000493161	TMEM202	A6NGA9	273 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	TMEM110-MUSTN1	A8MSY1	372 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	C9orf172	C9J069	976 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161		F8VZ95	297 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	SUV39H1	O43463	412 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	BUB1B	O60566	1050 aa	Predicted RBP	13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	CYP1A1	P04798	512 aa	Predicted RBP	13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	ITGB2	P05107	769 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	MMP8	P22894	467 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	XPA	P23025	273 aa	Predicted RBP	13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	SDC4	P31431	198 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	PTPN9	P43378	593 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	LIG3	P49916	1009 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	MAPK10	P53779	464 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	RAD51	Q06609	339 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	CLCA4	Q14CN2	919 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	UGP2	Q16851	508 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	OGFOD3	Q6PK18	319 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	SPRED1	Q7Z699	444 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	RTL3	Q8N8U3	475 aa	Known RBP	13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	CCL4L1	Q8NHW4	92 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	FAM172A	Q8WUF8	416 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	WDR92	Q96MX6	357 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	C11orf70	Q9BRQ4	267 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	SEMA6C	Q9H3T2	930 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	RETREG1	Q9H6L5	497 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	FGF22	Q9HCT0	170 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	APPL1	Q9UKG1	709 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	DAAM1	Q9Y4D1	1078 aa		13.8	□□□□□ -0.2
SAMM50-204	ENST00000493161	TSPAN11	A1L157	253 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	RASA4B	C9J798	803 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	TMX2-CTNND1	H3BSU7	103 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	RASA4	O43374	803 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	GFPT2	O94808	682 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	TNF	P01375	233 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	GLB1	P16278	677 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	HTR1B	P28222	390 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	EPHB2	P29323	1055 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	RFC1	P35251	1148 aa	Predicted RBP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	RGR	P47804	291 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	FMO1	Q01740	532 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	ELP6	Q0PNE2	266 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	PTP4A2	Q12974	167 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	SERINC3	Q13530	473 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	TPD52L1	Q16890	204 aa	Predicted RBP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	INO80D	Q53TQ3	878 aa	Predicted RBP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	COLEC12	Q5KU26	742 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	MANEA	Q5SRI9	462 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	CERCAM	Q5T4B2	595 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	ATG14	Q6ZNE5	492 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	STRADA	Q7RTN6	431 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	TAF8	Q7Z7C8	310 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	DTX1	Q86Y01	620 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	CAMK1D	Q8IU85	385 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	SLITRK4	Q8IW52	837 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	PELI3	Q8N2H9	469 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	MSANTD4	Q8NCY6	345 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	FAM46D	Q8NEK8	389 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	JPH3	Q8WXH2	748 aa	Predicted RBP	13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	PCDHB18P	Q96TA0	734 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	NCAPG	Q9BPX3	1015 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	STK33	Q9BYT3	514 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	TMEM168	Q9H0V1	697 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	SUV39H2	Q9H5I1	410 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	LRIT1	Q9P2V4	623 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	DGKB	Q9Y6T7	804 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161	ANKRD36	A6QL64	1941 aa		13.79	□□□□□ -0.2
SAMM50-204	ENST00000493161		B4DGG1	531 aa		13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms