RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TGM2P21980 687 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 IL1R2P27930 398 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 HCAR3P49019 387 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 LIG3P49916 1009 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 C1orf61Q13536 156 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 FIGNQ5HY92 759 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 HGSNATQ68CP4 663 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 NYAP1Q6ZVC0 841 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 SRLQ86TD4 932 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 MAPK15Q8TD08 544 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 ECHDC3Q96DC8 303 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 NSMCE3Q96MG7 304 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 BBC3Q96PG8 261 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 IL12RB2Q99665 862 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 ISCUQ9H1K1 167 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 ATP13A3Q9H7F0 1226 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 EVA1BQ9NVM1 165 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 ATP8A1Q9Y2Q0 1164 aa18.94■□□□□ 0.62
CCDC88B-206ENST00000473405 EME2A4GXA9 379 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 TSHRP16473 764 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 SERPINA4P29622 427 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 ADKP55263 362 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 IL10RBQ08334 325 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 RALGDSQ12967 914 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 COL9A2Q14055 689 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 DPYSL2Q16555 572 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 TBC1D25Q3MII6 688 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 ERAP2Q6P179 960 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 EFL1Q7Z2Z2 1120 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 SLC35F3Q8IY50 421 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 FGF11Q92914 225 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 TRIM11Q96F44 468 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 DEPDC7Q96QD5 511 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 CINPQ9BW66 212 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 SLC13A1Q9BZW2 595 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 SP110Q9HB58 689 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 MYO1AQ9UBC5 1043 aa18.93■□□□□ 0.62
CCDC88B-206ENST00000473405 CPED1A4D0V7 1026 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 CASC3O15234 703 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 SERPINC1P01008 464 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 MPOP05164 745 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 MYBL1P10243 752 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 PCK1P35558 622 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 PBX1P40424 430 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 PEX5P50542 639 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 ZNF135P52742 658 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 PPARDQ03181 441 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 INPP5AQ14642 412 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 NR0B2Q15466 257 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 ALG11Q2TAA5 492 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 SMTNL2Q2TAL5 461 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 PERM1Q5SV97 790 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 C6orf132Q5T0Z8 1188 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 CFAP58Q5T655 872 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 KCTD16Q68DU8 428 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 ABCG4Q9H172 646 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 ETNK2Q9NVF9 386 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 OR1A2Q9Y585 309 aa18.92■□□□□ 0.62
CCDC88B-206ENST00000473405 TENM4Q6N022 2769 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 TRAFD1O14545 582 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 YY2O15391 372 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 USP12O75317 370 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 PEX11BO96011 259 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 GM2AP17900 193 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 HK3P52790 923 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 NSUN2Q08J23 767 aaKnown RBP eCLIP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 RFTN1Q14699 578 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 NFATC4Q14934 902 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 ISXQ2M1V0 245 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 FAXCQ5TGI0 409 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 PLA2G15Q8NCC3 412 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 TSACCQ96A04 125 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 PSKH2Q96QS6 385 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 ZWILCHQ9H900 591 aa18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 MRPL47Q9HD33 250 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.91■□□□□ 0.62
CCDC88B-206ENST00000473405 A0A1W2PNU3 283 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 A0A1W2PQJ5 194 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 TMEM110-MUSTN1A8MSY1 372 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 RRP8O43159 456 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 DXOO77932 396 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 PCCBP05166 539 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 ANXA6P08133 673 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 ACTN2P35609 894 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 GABREP78334 506 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 BCL2L1Q07817 233 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 SLC10A7Q0GE19 358 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 MTM1Q13496 603 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 ACAP1Q15027 740 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 TCEA2Q15560 299 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 TMCO4Q5TGY1 634 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 TXNRD3NBQ6F5E7 133 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 CRTC1Q6UUV9 634 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 POLNQ7Z5Q5 900 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 LUZP1Q86V48 1076 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 HID1Q8IV36 788 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 FSTL5Q8N475 847 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 LZTR1Q8N653 840 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 PCDH19Q8TAB3 1148 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 CSPG4P5Q96PW8 444 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms