RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 NFKBIAP25963 317 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 NMBRP28336 390 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 HPDP32754 393 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 LTBRP36941 435 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 GP5P40197 560 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 NUMBP49757 651 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 EPHB1P54762 984 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CSE1LP55060 971 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ST8SIA6P61647 398 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CBX1P83916 185 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 DLX2Q07687 328 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 TRAF2Q12933 501 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 TAF1AQ15573 450 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CARD16Q5EG05 197 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ATXN7L2Q5T6C5 722 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 GRTP1Q5TC63 336 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 TRIM68Q6AZZ1 485 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 EXOC3L1Q86VI1 746 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CNTN4Q8IWV2 1026 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 NAT16Q8N8M0 369 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 UCMAQ8WVF2 138 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 SCG3Q8WXD2 468 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 SUSD6Q92537 303 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 MYO19Q96H55 970 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 LRIG1Q96JA1 1093 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 RPL10LQ96L21 214 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ZNF641Q96N77 438 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 SMC6Q96SB8 1091 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 TRMT61BQ9BVS5 477 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 TM6SF2Q9BZW4 377 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 HPS4Q9NQG7 708 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 C20orf96Q9NUD7 363 aaPredicted RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CDH22Q9UJ99 828 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 ADAM21Q9UKJ8 722 aa12.91□□□□□ -0.34
VPS13D-205ENST00000473099 SMG5Q9UPR3 1016 aaKnown RBP12.91□□□□□ -0.34
VPS13D-205ENST00000473099 CXorf49A8MYA2 514 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 WASH3PC4AMC7 463 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SIN3BO75182 1162 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 GJB3O75712 270 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PGLSO95336 258 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PRLP01236 227 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 IGFBP4P22692 258 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SPRP35270 261 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 HADHAP40939 763 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 CTSOP43234 321 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 STK19P49842 368 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SLC18A1P54219 525 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 ACVR1Q04771 509 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 THOC5Q13769 683 aaKnown RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 ADGRE1Q14246 886 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 GALNT3Q14435 633 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 DLG2Q15700 870 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 GEN1Q17RS7 908 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 MYLK3Q32MK0 819 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 ITPRIPL2Q3MIP1 535 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 ACCSLQ4AC99 568 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 DGKKQ5KSL6 1271 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 CES3Q6UWW8 571 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PACS1Q6VY07 963 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 KIAA0408Q6ZU52 694 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SUGP1Q8IWZ8 645 aaKnown RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SRRM1Q8IYB3 904 aaKnown RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 RYBPQ8N488 228 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PAF1Q8N7H5 531 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 LPCAT1Q8NF37 534 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 BLOC1S5Q8TDH9 187 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 MRRFQ96E11 262 aaKnown RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 TRIM56Q9BRZ2 755 aaKnown RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 MAGEE1Q9HCI5 957 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 SMYD2Q9NRG4 433 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 ELOVL2Q9NXB9 296 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 HECAQ9UBI9 543 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 EVLQ9UI08 416 aaPredicted RBP12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PLA2G4CQ9UP65 541 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 PCDHGC4Q9Y5F7 938 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 COL4A2P08572 1712 aa12.9□□□□□ -0.34
VPS13D-205ENST00000473099 LRRK1Q38SD2 2015 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PRPF4O43172 522 aaKnown RBP eCLIP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 LDB2O43679 373 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF821O75541 412 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 MT-ND3P03897 115 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 ERVK-10P10266 1014 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 BRAFP15056 766 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 LPOP22079 712 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PSMA3P25788 255 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 POLD2P49005 469 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 CCNHP51946 323 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 POLR2LP62875 67 aaKnown RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PRAMEP78395 509 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 GABPB1Q06547 395 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 CNGA3Q16281 694 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 QPCTQ16769 361 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 GAB4Q2WGN9 574 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 HSP90AA5PQ58FG0 334 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 TEDDM1Q5T9Z0 273 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 ESRP1Q6NXG1 681 aaKnown RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 TIFABQ6ZNK6 161 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 GLT6D1Q7Z4J2 308 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 GALNT7Q86SF2 657 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms