RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PPHLN1Q8NEY8 458 aaKnown RBP21.27■■□□□ 1
UPF3A-202ENST00000375299 ZNF420Q8TAQ5 688 aaPredicted RBP21.27■■□□□ 1
UPF3A-202ENST00000375299 KCTD13Q8WZ19 329 aa21.27■■□□□ 1
UPF3A-202ENST00000375299 EIF2AQ9BY44 585 aaKnown RBP21.27■■□□□ 1
UPF3A-202ENST00000375299 GDAP2Q9NXN4 497 aa21.27■■□□□ 1
UPF3A-202ENST00000375299 SFMBT1Q9UHJ3 866 aa21.27■■□□□ 1
UPF3A-202ENST00000375299 COL1A2P08123 1366 aa21.27■□□□□ 0.99
UPF3A-202ENST00000375299 BOLA2-SMG1P6H3BVE0 249 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 FYNP06241 537 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 ACADVLP49748 655 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 POU4F1Q01851 419 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 LAMC2Q13753 1193 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 SLC36A3Q495N2 470 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 SLC44A4Q53GD3 710 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF280DQ6N043 979 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 C2CD4AQ8NCU7 369 aaPredicted RBP21.26■□□□□ 0.99
UPF3A-202ENST00000375299 USP33Q8TEY7 942 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 VPS50Q96JG6 964 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF560Q96MR9 790 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 TRIM15Q9C019 465 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 RPF2Q9H7B2 306 aaKnown RBP21.26■□□□□ 0.99
UPF3A-202ENST00000375299 CXorf21Q9HAI6 301 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 CHST12Q9NRB3 414 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 FBXW11Q9UKB1 542 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 AURKCQ9UQB9 309 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 AQP12BA6NM10 295 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 GIPC1O14908 333 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 CACNG3O60359 315 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 GJA9P57773 515 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 RAB15P59190 212 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 NAA20P61599 178 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 ARHGAP1Q07960 439 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 SLC27A1Q6PCB7 646 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 OSTM1Q86WC4 334 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 AQP12AQ8IXF9 295 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 PCYOX1LQ8NBM8 494 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 SPATA22Q8NHS9 363 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 BORCS5Q969J3 196 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 THAP11Q96EK4 314 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 DOK1Q99704 481 aa21.26■□□□□ 0.99
UPF3A-202ENST00000375299 AAR2Q9Y312 384 aaKnown RBP21.26■□□□□ 0.99
UPF3A-202ENST00000375299 DHRS12A0PJE2 317 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ADM5C9JUS6 153 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 H3BMQ9 156 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 TMX2-CTNND1H3BSU7 103 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 NRP1O14786 923 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 CPB1P15086 417 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 YWHAQP27348 245 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 HOXA11P31270 313 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 TTKP33981 857 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 GALNT1Q10472 559 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 INPP5AQ14642 412 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 FAM83EQ2M2I3 478 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 BTBD8Q5XKL5 378 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 RNF168Q8IYW5 571 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 COG8Q96MW5 612 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 AGPAT4Q9NRZ5 378 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 CLEC11AQ9Y240 323 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 KANSL1LA0AUZ9 987 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 NME4O00746 187 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 SUPT3HO75486 399 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 SEC24DO94855 1032 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 UGT1A6P19224 532 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 DCKP27707 260 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 STX1BP61266 288 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ATP6V0D1P61421 351 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ATP6AP1Q15904 470 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 GJC2Q5T442 439 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF470Q6ECI4 717 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ALKAL1Q6UXT8 129 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 LARP4Q71RC2 724 aaKnown RBP eCLIP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 FUNDC1Q8IVP5 155 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 GPATCH1Q9BRR8 931 aaKnown RBP21.25■□□□□ 0.99
UPF3A-202ENST00000375299 C9orf16Q9BUW7 83 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 SLC2A6Q9UGQ3 507 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 BLOC1S6Q9UL45 172 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 TCAF1Q9Y4C2 921 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 SNX10Q9Y5X0 201 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF236Q9UL36 1845 aa21.25■□□□□ 0.99
UPF3A-202ENST00000375299 BBIP1A8MTZ0 92 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 FOXD2O60548 495 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 CD4P01730 458 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 PMS2P3Q13401 168 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF829Q3KNS6 432 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 ARL13BQ3SXY8 428 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 CLEC20AQ6ZU45 233 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 RETREG3Q86VR2 466 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 RNF135Q8IUD6 432 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 CELF6Q96J87 481 aaKnown RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 PAIP1Q9H074 479 aaKnown RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 ABCD2Q9UBJ2 740 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 TRAF6Q9Y4K3 522 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 FAM149AA5PLN7 773 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 CLASP2O75122 1294 aaKnown RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 RECQL4O94761 1208 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 MT-CYBP00156 380 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-202ENST00000375299 ZNF286BP0CG31 522 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 IL10P22301 178 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 FASP25445 335 aa21.24■□□□□ 0.99
UPF3A-202ENST00000375299 TAF6P49848 677 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms