RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SNRPB2P08579 225 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 MBL2P11226 248 aaPredicted RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 PCNAP12004 261 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PROZP22891 400 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 NMBRP28336 390 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PTGER2P43116 358 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SP2Q02086 613 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MAPRE1Q15691 268 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 ATP6AP1Q15904 470 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 FUT11Q495W5 492 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 FAM209AQ5JX71 171 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SAMD4BQ5PRF9 694 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 CYS1Q717R9 158 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 R3HCC1LQ7Z5L2 792 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 SLCO6A1Q86UG4 719 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 FUNDC1Q8IVP5 155 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 DENND6AQ8IWF6 608 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SDCCAG3Q96C92 435 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PHF21BQ96EK2 531 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 TMEM176AQ96HP8 235 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PPP1R16BQ96T49 567 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 OLFM1Q99784 485 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 FTHL17Q9BXU8 183 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PORCNQ9H237 461 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 POMKQ9H5K3 350 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SMPD3Q9NY59 655 aaPredicted RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 UTP6Q9NYH9 597 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 PKD2L2Q9NZM6 624 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MTRRQ9UBK8 725 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SLCO3A1Q9UIG8 710 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 COL4A5P29400 1685 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 IQCA1LA6NCM1 817 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PTGES3LE9PB15 166 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 CLASP2O75122 1294 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 SEC14L2O76054 403 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 INMTO95050 263 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 CHEK2O96017 543 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 EGFRP00533 1210 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 NR3C2P08235 984 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PFKMP08237 780 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 KCNA2P16389 499 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 RPS9P46781 194 aaKnown RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 SEPHS1P49903 392 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 HLCSP50747 726 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MPP1Q00013 466 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 INAQ16352 499 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 KCNMB4Q86W47 210 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 ANKRD13BQ86YJ7 626 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MFSD6LQ8IWD5 586 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 SIX5Q8N196 739 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MAGED4Q96JG8 741 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 ING2Q9H160 280 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 JPH1Q9HDC5 661 aaPredicted RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 PALMDQ9NP74 551 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 PRDM8Q9NQV8 689 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 RNF19AQ9NV58 838 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 TBC1D13Q9NVG8 400 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 AASSQ9UDR5 926 aa13.56□□□□□ -0.24
SKA3-201ENST00000298260 MTF2Q9Y483 593 aaPredicted RBP13.56□□□□□ -0.24
SKA3-201ENST00000298260 H0Y858 1186 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 KPNA6O60684 536 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 DDHD2O94830 711 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 PGK1P00558 417 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 PSAPP07602 524 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 HSPA1AP0DMV8 641 aaKnown RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 HSPA1BP0DMV9 641 aaKnown RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 BMP4P12644 408 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TRAP1Q12931 704 aaKnown RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 TMEM132AQ24JP5 1023 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 RABL3Q5HYI8 236 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 CATSPEREQ5SY80 951 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 ATAD3BQ5T9A4 648 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 EEF1DP3Q658K8 133 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 GTF2IRD2BQ6EKJ0 949 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 SLC16A12Q6ZSM3 486 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 GTF2IRD2Q86UP8 949 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 LRRC71Q8N4P6 559 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 NDNFQ8TB73 568 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 C3orf30Q96M34 536 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 CGREF1Q99674 301 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TMEM39BQ9GZU3 492 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TLR9Q9NR96 1032 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 ARMC1Q9NVT9 282 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 GPSM3Q9Y4H4 160 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 MGAMO43451 1857 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 AGRPO00253 132 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TCF3P15923 654 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 AGXTP21549 392 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TTKP33981 857 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 IST1P53990 364 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 TMBIM6P55061 237 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 CBLBQ13191 982 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 GEN1Q17RS7 908 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 HSDL1Q3SXM5 330 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 INTS11Q5TA45 600 aaKnown RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 PODNQ7Z5L7 613 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 HEATR4Q86WZ0 1026 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 REM2Q8IYK8 340 aaPredicted RBP13.55□□□□□ -0.24
SKA3-201ENST00000298260 KIAA2013Q8IYS2 634 aa13.55□□□□□ -0.24
SKA3-201ENST00000298260 ADGRG5Q8IZF4 528 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms