RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PALMDQ9NP74 551 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 CLDND1Q9NY35 253 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 APPL1Q9UKG1 709 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 PCDHGB4Q9UN71 923 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 PCDHGB5Q9Y5G0 923 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 HEY1Q9Y5J3 304 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 IRAK3Q9Y616 596 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 TCRBV3S1A0A5B6 114 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 AIM2O14862 343 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 GRID2O43424 1007 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 KLHL41O60662 606 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 RNASEH2AO75792 299 aaKnown RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 B3GAT3O94766 335 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 POLBP06746 335 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 C7P10643 843 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 CA8P35219 290 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 LTBRP36941 435 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 SERPINB5P36952 375 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 POLD2P49005 469 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 GLUD2P49448 558 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 TFAMQ00059 246 aaKnown RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 RHDQ02161 417 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 C15orf59Q2T9L4 293 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 LSM12Q3MHD2 195 aaKnown RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 ZBED5Q49AG3 693 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 PKDCCQ504Y2 493 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 SH3PXD2AQ5TCZ1 1133 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 KIAA0319Q5VV43 1072 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 OR6B2Q6IFH4 312 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 DCLRE1AQ6PJP8 1040 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 NAPRTQ6XQN6 538 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 HACD2Q6Y1H2 254 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 LPCAT2Q7L5N7 544 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 AMIGO2Q86SJ2 522 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 PATL1Q86TB9 770 aaKnown RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 PIAS4Q8N2W9 510 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 MFSD2AQ8NA29 543 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 GOLM1Q8NBJ4 401 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 HTR3CQ8WXA8 447 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 KHSRPQ92945 711 aaKnown RBP eCLIP10.41□□□□□ -0.748e-7■■■□□ 16.1
UPF3B-201ENST00000276201 MAELQ96JY0 434 aaKnown RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 TWNKQ96RR1 684 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 CDCA3Q99618 268 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 GATA5Q9BWX5 397 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 OLAHQ9NV23 265 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 RHBDL2Q9NX52 303 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 HESX1Q9UBX0 185 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 BARX2Q9UMQ3 279 aaPredicted RBP10.41□□□□□ -0.74
UPF3B-201ENST00000276201 USP3Q9Y6I4 520 aa10.41□□□□□ -0.74
UPF3B-201ENST00000276201 ARHGEF37A1IGU5 675 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TIMM44O43615 452 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 ZMPSTE24O75844 475 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 URODP06132 367 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 COL6A2P12110 1019 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PORP16435 677 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 ZNF12P17014 697 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 KCNA5P22460 613 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 SLC7A1P30825 629 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 SDC4P31431 198 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 SLC6A3Q01959 620 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 DLX2Q07687 328 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 KCNC3Q14003 757 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PPP2R5DQ14738 602 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 MAPRE2Q15555 327 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PDCD4Q53EL6 469 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 LIPMQ5VYY2 423 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM110Q86TL2 294 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 DCLK2Q8N568 766 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 EFCAB3Q8N7B9 438 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TRIML2Q8N7C3 387 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RCN3Q96D15 328 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 KLHL32Q96NJ5 620 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TSPAN18Q96SJ8 248 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 SHCBP1LQ9BZQ2 653 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 ASB7Q9H672 318 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CLK4Q9HAZ1 481 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 NSMCE4AQ9NXX6 385 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RRN3Q9NYV6 651 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TXNDC16Q9P2K2 825 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 UBQLN1Q9UMX0 589 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CDYLQ9Y232 598 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 DERAQ9Y315 318 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 VWA8A3KMH1 1905 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 SPTBN5Q9NRC6 3674 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 UNC80Q8N2C7 3258 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 A0A087WXM4 84 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 C7orf72A4D263 438 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 ATP6V1G1O75348 118 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 HNRNPCP07910 306 aaKnown RBP eCLIP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CNPP09543 421 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CYP3A5P20815 502 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 LRPAP1P30533 357 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RPL9P32969 192 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 BRCC3P46736 316 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 RAP1GAPP47736 663 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 CBX3Q13185 183 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 PEX6Q13608 980 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TRIM25Q14258 630 aaKnown RBP10.4□□□□□ -0.74
UPF3B-201ENST00000276201 GK3PQ14409 553 aa10.4□□□□□ -0.74
UPF3B-201ENST00000276201 TMEM132DQ14C87 1099 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms