RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SPATA31A7Q8IWB4 1347 aa13.58□□□□□ -0.24
CLN3-261ENST00000637686 FBLN1P23142 703 aa13.57□□□□□ -0.24
CLN3-261ENST00000637686 COL18A1P39060 1754 aa13.57□□□□□ -0.24
CLN3-261ENST00000637686 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
CLN3-261ENST00000637686 USP35Q9P2H5 1018 aa13.56□□□□□ -0.24
CLN3-261ENST00000637686 CGNL1Q0VF96 1302 aa13.56□□□□□ -0.24
CLN3-261ENST00000637686 SPATA31A1Q5TZJ5 1347 aa13.56□□□□□ -0.24
CLN3-261ENST00000637686 COL5A2P05997 1499 aaPredicted RBP13.55□□□□□ -0.24
CLN3-261ENST00000637686 KIF20BQ96Q89 1820 aa13.55□□□□□ -0.24
CLN3-261ENST00000637686 ONECUT3O60422 494 aaPredicted RBP13.55□□□□□ -0.24
CLN3-261ENST00000637686 SEPT12Q8IYM1 358 aa13.55□□□□□ -0.24
CLN3-261ENST00000637686 WASHC2AQ641Q2 1341 aa13.55□□□□□ -0.24
CLN3-261ENST00000637686 CCDC7Q96M83 1385 aa13.55□□□□□ -0.24
CLN3-261ENST00000637686 LTN1O94822 1766 aa13.54□□□□□ -0.24
CLN3-261ENST00000637686 RGPD5Q99666 1765 aa13.54□□□□□ -0.24
CLN3-261ENST00000637686 A0A0G2JS52 829 aa13.54□□□□□ -0.24
CLN3-261ENST00000637686 MYT1Q01538 1121 aa13.54□□□□□ -0.24
CLN3-261ENST00000637686 CSB-PGBD3P0DP91 1061 aa13.53□□□□□ -0.24
CLN3-261ENST00000637686 RRS1Q15050 365 aaKnown RBP13.53□□□□□ -0.24
CLN3-261ENST00000637686 TOM1L2Q6ZVM7 507 aa13.53□□□□□ -0.24
CLN3-261ENST00000637686 MAP3K19Q56UN5 1328 aa13.53□□□□□ -0.24
CLN3-261ENST00000637686 AMPHP49418 695 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 TCP11L2Q8N4U5 519 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 IP6K1Q92551 441 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 KNSTRNQ9Y448 316 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 WDR17Q8IZU2 1322 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 CRB1P82279 1406 aa13.52□□□□□ -0.25
CLN3-261ENST00000637686 ABCC6O95255 1503 aa13.51□□□□□ -0.25
CLN3-261ENST00000637686 BARGINQ6ZT62 677 aa13.51□□□□□ -0.25
CLN3-261ENST00000637686 HOXC9P31274 260 aa13.5□□□□□ -0.25
CLN3-261ENST00000637686 LTV1Q96GA3 475 aaPredicted RBP13.5□□□□□ -0.25
CLN3-261ENST00000637686 THRAP3Q9Y2W1 955 aaKnown RBP13.5□□□□□ -0.25
CLN3-261ENST00000637686 BRWD3Q6RI45 1802 aa13.5□□□□□ -0.25
CLN3-261ENST00000637686 ERBB3P21860 1342 aa13.49□□□□□ -0.25
CLN3-261ENST00000637686 KRT27Q7Z3Y8 459 aa13.49□□□□□ -0.25
CLN3-261ENST00000637686 ANKRD24Q8TF21 1146 aa13.49□□□□□ -0.25
CLN3-261ENST00000637686 BLMP54132 1417 aaPredicted RBP13.48□□□□□ -0.25
CLN3-261ENST00000637686 THSD7AQ9UPZ6 1657 aa13.48□□□□□ -0.25
CLN3-261ENST00000637686 TNNT2P45379 298 aaPredicted RBP13.48□□□□□ -0.25
CLN3-261ENST00000637686 UPF1Q92900 1129 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-261ENST00000637686 CARD10Q9BWT7 1032 aa13.48□□□□□ -0.25
CLN3-261ENST00000637686 NLRP2Q9NX02 1062 aa13.48□□□□□ -0.25
CLN3-261ENST00000637686 PPM1GO15355 546 aaPredicted RBP13.47□□□□□ -0.25
CLN3-261ENST00000637686 PER1O15534 1290 aaPredicted RBP13.47□□□□□ -0.25
CLN3-261ENST00000637686 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
CLN3-261ENST00000637686 EMILIN1Q9Y6C2 1016 aa13.47□□□□□ -0.25
CLN3-261ENST00000637686 ANKRD26Q9UPS8 1709 aa13.47□□□□□ -0.25
CLN3-261ENST00000637686 RTL1A6NKG5 1358 aa13.46□□□□□ -0.25
CLN3-261ENST00000637686 NSD2O96028 1365 aa13.46□□□□□ -0.25
CLN3-261ENST00000637686 HSP90AB2PQ58FF8 381 aa13.46□□□□□ -0.25
CLN3-261ENST00000637686 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
CLN3-261ENST00000637686 FAM182BQ5T319 152 aa13.45□□□□□ -0.26
CLN3-261ENST00000637686 POLKQ9UBT6 870 aa13.45□□□□□ -0.26
CLN3-261ENST00000637686 MAP2P11137 1827 aaKnown RBP13.45□□□□□ -0.26
CLN3-261ENST00000637686 FLT4P35916 1363 aa13.45□□□□□ -0.26
CLN3-261ENST00000637686 KIF24Q5T7B8 1368 aa13.45□□□□□ -0.26
CLN3-261ENST00000637686 PEAK1Q9H792 1746 aa13.44□□□□□ -0.26
CLN3-261ENST00000637686 PDE3BQ13370 1112 aa13.44□□□□□ -0.26
CLN3-261ENST00000637686 CC2D1BQ5T0F9 858 aaKnown RBP13.44□□□□□ -0.26
CLN3-261ENST00000637686 CNGB1Q14028 1251 aaPredicted RBP13.43□□□□□ -0.26
CLN3-261ENST00000637686 INSRP06213 1382 aa13.43□□□□□ -0.26
CLN3-261ENST00000637686 DISP2A7MBM2 1401 aa13.42□□□□□ -0.26
CLN3-261ENST00000637686 DDB1Q16531 1140 aa13.42□□□□□ -0.26
CLN3-261ENST00000637686 CDCA7Q9BWT1 371 aaPredicted RBP13.42□□□□□ -0.26
CLN3-261ENST00000637686 PARP4Q9UKK3 1724 aaKnown RBP13.42□□□□□ -0.26
CLN3-261ENST00000637686 IL2RBP14784 551 aa13.41□□□□□ -0.26
CLN3-261ENST00000637686 NBPF6Q5VWK0 638 aa13.41□□□□□ -0.26
CLN3-261ENST00000637686 NBPF4Q96M43 638 aa13.41□□□□□ -0.26
CLN3-261ENST00000637686 EP400Q96L91 3159 aa13.41□□□□□ -0.26
CLN3-261ENST00000637686 WNK3Q9BYP7 1800 aa13.41□□□□□ -0.26
CLN3-261ENST00000637686 FAM208AQ9UK61 1670 aaKnown RBP13.4□□□□□ -0.26
CLN3-261ENST00000637686 RGPD2P0DJD1 1756 aa13.4□□□□□ -0.26
CLN3-261ENST00000637686 SMG6Q86US8 1419 aaKnown RBP13.4□□□□□ -0.26
CLN3-261ENST00000637686 EXOC5O00471 708 aa13.4□□□□□ -0.26
CLN3-261ENST00000637686 LRRC37A3O60309 1634 aa13.39□□□□□ -0.27
CLN3-261ENST00000637686 FAM196AQ6ZSG2 479 aa13.39□□□□□ -0.27
CLN3-261ENST00000637686 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
CLN3-261ENST00000637686 NPC1L1Q9UHC9 1359 aa13.39□□□□□ -0.27
CLN3-261ENST00000637686 DIEXFQ68CQ4 756 aaKnown RBP13.38□□□□□ -0.27
CLN3-261ENST00000637686 CCDC125Q86Z20 511 aa13.38□□□□□ -0.27
CLN3-261ENST00000637686 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
CLN3-261ENST00000637686 MARCH10Q8NA82 808 aaPredicted RBP13.37□□□□□ -0.27
CLN3-261ENST00000637686 TRIM37O94972 964 aa13.36□□□□□ -0.27
CLN3-261ENST00000637686 MTHFSP49914 203 aa13.36□□□□□ -0.27
CLN3-261ENST00000637686 DDX10Q13206 875 aaKnown RBP13.36□□□□□ -0.27
CLN3-261ENST00000637686 SF3B2Q13435 895 aaKnown RBP13.36□□□□□ -0.27
CLN3-261ENST00000637686 EYA1Q99502 592 aa13.36□□□□□ -0.27
CLN3-261ENST00000637686 TNS2Q63HR2 1409 aa13.35□□□□□ -0.27
CLN3-261ENST00000637686 MEGF6O75095 1541 aa13.34□□□□□ -0.27
CLN3-261ENST00000637686 OVOS2A0A0G2JMS6 1433 aa13.34□□□□□ -0.27
CLN3-261ENST00000637686 DEFB132Q7Z7B7 95 aa13.34□□□□□ -0.27
CLN3-261ENST00000637686 DDX54Q8TDD1 881 aaKnown RBP13.34□□□□□ -0.27
CLN3-261ENST00000637686 RAPGEF4Q8WZA2 1011 aa13.34□□□□□ -0.27
CLN3-261ENST00000637686 TATP17735 454 aaPredicted RBP13.33□□□□□ -0.28
CLN3-261ENST00000637686 ZCRB1Q8TBF4 217 aaKnown RBP13.33□□□□□ -0.28
CLN3-261ENST00000637686 NCAPD2Q15021 1401 aa13.31□□□□□ -0.28
CLN3-261ENST00000637686 RGPD1P0DJD0 1748 aa13.31□□□□□ -0.28
CLN3-261ENST00000637686 IL13P35225 146 aa13.31□□□□□ -0.28
CLN3-261ENST00000637686 IGSF1Q8N6C5 1336 aa13.31□□□□□ -0.28
CLN3-261ENST00000637686 APBA3O96018 575 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms