RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 SH3RF1Q7Z6J0 888 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 CABLES1Q8TDN4 633 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 AGBL1Q96MI9 1066 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 BEGAINQ9BUH8 593 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 C1QTNF2Q9BXJ5 285 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 TBC1D2Q9BYX2 928 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 ZBTB3Q9H5J0 574 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 PGPEP1Q9NXJ5 209 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 MAP4K5Q9Y4K4 846 aa4.46□□□□□ -1.7
SCN1A-215ENST00000637285 CELA2BP08218 269 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-215ENST00000637285 CTSOP43234 321 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-215ENST00000637285 RELBQ01201 579 aa4.45□□□□□ -1.7
SCN1A-215ENST00000637285 GALNT6Q8NCL4 622 aa4.45□□□□□ -1.7
SCN1A-215ENST00000637285 ARMC2Q8NEN0 867 aa4.45□□□□□ -1.7
SCN1A-215ENST00000637285 INSM2Q96T92 566 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-215ENST00000637285 SPOCK3Q9BQ16 436 aa4.45□□□□□ -1.7
SCN1A-215ENST00000637285 POLMQ9NP87 494 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-215ENST00000637285 CNTNAP5Q8WYK1 1306 aa4.45□□□□□ -1.7
SCN1A-215ENST00000637285 PHF20L1A8MW92 1017 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 GJA5P36382 358 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 SRSF11Q05519 484 aaKnown RBP4.44□□□□□ -1.7
SCN1A-215ENST00000637285 NBPF14Q5TI25 921 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 GIGYF2Q6Y7W6 1299 aaKnown RBP4.44□□□□□ -1.7
SCN1A-215ENST00000637285 Q6ZVU0 165 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 TRMT44Q8IYL2 757 aaKnown RBP4.44□□□□□ -1.7
SCN1A-215ENST00000637285 DCAF5Q96JK2 942 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 ENAMQ9NRM1 1142 aa4.44□□□□□ -1.7
SCN1A-215ENST00000637285 SH3BP5LQ7L8J4 393 aa4.43□□□□□ -1.7
SCN1A-215ENST00000637285 ZNF395Q9H8N7 513 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-215ENST00000637285 NUTM2BA6NNL0 878 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-215ENST00000637285 NUTM2EB1AL46 878 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-215ENST00000637285 ITGB2P05107 769 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 GAS6Q14393 721 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 DIXDC1Q155Q3 683 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 ERFEQ4G0M1 354 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 NUTM2DQ5VT03 806 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-215ENST00000637285 RIC3Q7Z5B4 369 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 PODNQ7Z5L7 613 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 NUTM2AQ8IVF1 878 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-215ENST00000637285 BEND7Q8N7W2 519 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-215ENST00000637285 NEDD1Q8NHV4 660 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 KRTAP4-8Q9BYQ9 185 aa4.42□□□□□ -1.7
SCN1A-215ENST00000637285 SENP3-EIF4A1A0A087X0R7 540 aa4.41□□□□□ -1.7
SCN1A-215ENST00000637285 K7ELQ4 463 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-215ENST00000637285 PROCP04070 461 aa4.41□□□□□ -1.7
SCN1A-215ENST00000637285 PRPF38BQ5VTL8 546 aaKnown RBP4.41□□□□□ -1.7
SCN1A-215ENST00000637285 RNF217Q8TC41 542 aa4.41□□□□□ -1.7
SCN1A-215ENST00000637285 KCTD15Q96SI1 283 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-215ENST00000637285 CUEDC1Q9NWM3 386 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-215ENST00000637285 GPR25O00155 361 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 PLCB2Q00722 1185 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 DHX9Q08211 1270 aaKnown RBP4.39□□□□□ -1.71
SCN1A-215ENST00000637285 AMHR2Q16671 573 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 QPCTQ16769 361 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 Q8N3U1 123 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 SLC10A4Q96EP9 437 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 PSMG3-AS1Q96PY0 264 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 ARHGAP9Q9BRR9 750 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 IGF1RP08069 1367 aa4.39□□□□□ -1.71
SCN1A-215ENST00000637285 BCRP11274 1271 aa4.38□□□□□ -1.71
SCN1A-215ENST00000637285 RHOQP17081 205 aa4.38□□□□□ -1.71
SCN1A-215ENST00000637285 RAB15P59190 212 aa4.38□□□□□ -1.71
SCN1A-215ENST00000637285 HELBQ8NG08 1087 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-215ENST00000637285 MBIPQ9NS73 344 aa4.38□□□□□ -1.71
SCN1A-215ENST00000637285 FURINP09958 794 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 BAG6P46379 1132 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 HAP1P54257 671 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-215ENST00000637285 INTS6LQ5JSJ4 861 aaKnown RBP4.37□□□□□ -1.71
SCN1A-215ENST00000637285 FOXD4L5Q5VV16 416 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-215ENST00000637285 FOXR1Q6PIV2 292 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 RIPOR1Q6ZS17 1223 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 LYSMD3Q7Z3D4 306 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 ZBTB33Q86T24 672 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 GPKOWQ92917 476 aaPredicted RBP eCLIP4.37□□□□□ -1.71
SCN1A-215ENST00000637285 ACDQ96AP0 544 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 ZNF837Q96EG3 531 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-215ENST00000637285 TMPRSS4Q9NRS4 437 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 LIMD1Q9UGP4 676 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 KDM2AQ9Y2K7 1162 aa4.37□□□□□ -1.71
SCN1A-215ENST00000637285 RTL5Q5HYW3 569 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-215ENST00000637285 PRICKLE2Q7Z3G6 844 aa4.36□□□□□ -1.71
SCN1A-215ENST00000637285 CDV3Q9UKY7 258 aaKnown RBP4.36□□□□□ -1.71
SCN1A-215ENST00000637285 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-215ENST00000637285 LILRB3O75022 631 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 ADH1AP07327 375 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 PTGIRP43119 386 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 PDXDC2PQ6P474 469 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 BARGINQ6ZT62 677 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 PARP9Q8IXQ6 854 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 TRIM22Q8IYM9 498 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 ZNF784Q8NCA9 323 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-215ENST00000637285 GTPBP3Q969Y2 492 aaKnown RBP4.35□□□□□ -1.71
SCN1A-215ENST00000637285 KRTAP9-2Q9BYQ4 174 aa4.35□□□□□ -1.71
SCN1A-215ENST00000637285 KRBA1A5PL33 1030 aa4.34□□□□□ -1.71
SCN1A-215ENST00000637285 ADD1P35611 737 aaKnown RBP4.34□□□□□ -1.71
SCN1A-215ENST00000637285 DBN1Q16643 649 aa4.34□□□□□ -1.71
SCN1A-215ENST00000637285 MYSM1Q5VVJ2 828 aa4.34□□□□□ -1.71
SCN1A-215ENST00000637285 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.34□□□□□ -1.71
SCN1A-215ENST00000637285 TRERF1Q96PN7 1200 aa4.34□□□□□ -1.71
SCN1A-215ENST00000637285 KRTAP9-6A0A140TA67 174 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms