RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 AEBP2Q6ZN18 517 aaPredicted RBP13.93□□□□□ -0.18
SCN1A-215ENST00000637285 CHIC1Q5VXU3 224 aa13.02□□□□□ -0.33
SCN1A-215ENST00000637285 SENP3Q9H4L4 574 aaPredicted RBP11.91□□□□□ -0.5
SCN1A-215ENST00000637285 PHF23Q9BUL5 403 aaPredicted RBP11.74□□□□□ -0.53
SCN1A-215ENST00000637285 FOXD1Q16676 465 aa11.15□□□□□ -0.62
SCN1A-215ENST00000637285 POTEDQ86YR6 584 aa10.65□□□□□ -0.7
SCN1A-215ENST00000637285 MSH5O43196 834 aa10.5□□□□□ -0.73
SCN1A-215ENST00000637285 PIAS4Q8N2W9 510 aaPredicted RBP10.38□□□□□ -0.75
SCN1A-215ENST00000637285 PLPPR3Q6T4P5 718 aa10.29□□□□□ -0.76
SCN1A-215ENST00000637285 PPP6R1Q9UPN7 881 aa10.25□□□□□ -0.77
SCN1A-215ENST00000637285 ADRA2BP18089 450 aa10.23□□□□□ -0.77
SCN1A-215ENST00000637285 MAPK8IP2Q13387 824 aaPredicted RBP9.47□□□□□ -0.89
SCN1A-215ENST00000637285 DMRT2Q9Y5R5 561 aa9.4□□□□□ -0.9
SCN1A-215ENST00000637285 SCAF1Q9H7N4 1312 aaKnown RBP9.34□□□□□ -0.91
SCN1A-215ENST00000637285 CACNB1Q02641 598 aaPredicted RBP9.2□□□□□ -0.94
SCN1A-215ENST00000637285 DCAF8L1A6NGE4 600 aa9.13□□□□□ -0.95
SCN1A-215ENST00000637285 PPP4R3CPQ6ZMV5 832 aa9.01□□□□□ -0.97
SCN1A-215ENST00000637285 HOXD11P31277 338 aaPredicted RBP8.95□□□□□ -0.98
SCN1A-215ENST00000637285 RNF39Q9H2S5 420 aa8.93□□□□□ -0.98
SCN1A-215ENST00000637285 CNKSR2Q8WXI2 1034 aa8.87□□□□□ -0.99
SCN1A-215ENST00000637285 RNF216Q9NWF9 866 aaPredicted RBP8.83□□□□□ -1
SCN1A-215ENST00000637285 C1QBPQ07021 282 aaKnown RBP8.79□□□□□ -1
SCN1A-215ENST00000637285 DNAJC5BQ9UF47 199 aa8.63□□□□□ -1.03
SCN1A-215ENST00000637285 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.61□□□□□ -1.03
SCN1A-215ENST00000637285 NCBP3Q53F19 620 aaKnown RBP8.59□□□□□ -1.03
SCN1A-215ENST00000637285 NPM3O75607 178 aaKnown RBP8.46□□□□□ -1.06
SCN1A-215ENST00000637285 CAPN15O75808 1086 aa8.35□□□□□ -1.07
SCN1A-215ENST00000637285 U3KPZ7 1027 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-215ENST00000637285 SPINK5Q9NQ38 1064 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-215ENST00000637285 POTEHQ6S545 545 aa8.31□□□□□ -1.08
SCN1A-215ENST00000637285 DSG3P32926 999 aa8.3□□□□□ -1.08
SCN1A-215ENST00000637285 TRHP20396 242 aaPredicted RBP8.16□□□□□ -1.1
SCN1A-215ENST00000637285 ABCB7O75027 752 aa8.14□□□□□ -1.11
SCN1A-215ENST00000637285 SLC4A2P04920 1241 aa8.13□□□□□ -1.11
SCN1A-215ENST00000637285 KCNA4P22459 653 aa8.11□□□□□ -1.11
SCN1A-215ENST00000637285 APLP2Q06481 763 aa8.09□□□□□ -1.11
SCN1A-215ENST00000637285 ZNF219Q9P2Y4 722 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-215ENST00000637285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-215ENST00000637285 HNRNPUL2Q1KMD3 747 aaKnown RBP8.02□□□□□ -1.13
SCN1A-215ENST00000637285 SAMD1Q6SPF0 538 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-215ENST00000637285 RBM42Q9BTD8 480 aaKnown RBP7.93□□□□□ -1.14
SCN1A-215ENST00000637285 POLA2Q14181 598 aa7.87□□□□□ -1.15
SCN1A-215ENST00000637285 CHRDL2Q6WN34 429 aa7.86□□□□□ -1.15
SCN1A-215ENST00000637285 MYCNP04198 464 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-215ENST00000637285 AKT1S1Q96B36 256 aa7.69□□□□□ -1.18
SCN1A-215ENST00000637285 SP7Q8TDD2 431 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-215ENST00000637285 ATF5Q9Y2D1 282 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-215ENST00000637285 ZBTB12Q9Y330 459 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-215ENST00000637285 REM2Q8IYK8 340 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-215ENST00000637285 OSCARQ8IYS5 282 aa7.63□□□□□ -1.19
SCN1A-215ENST00000637285 PIP4P2Q8N4L2 257 aa7.62□□□□□ -1.19
SCN1A-215ENST00000637285 SLC4A1APQ9BWU0 796 aaKnown RBP7.62□□□□□ -1.19
SCN1A-215ENST00000637285 FOXD4L1Q9NU39 408 aa7.62□□□□□ -1.19
SCN1A-215ENST00000637285 HAX1O00165 279 aa7.59□□□□□ -1.19
SCN1A-215ENST00000637285 PITPNM1O00562 1244 aa7.56□□□□□ -1.2
SCN1A-215ENST00000637285 FXR2P51116 673 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCN1A-215ENST00000637285 EVX2Q03828 476 aa7.45□□□□□ -1.22
SCN1A-215ENST00000637285 ZBTB22O15209 634 aa7.44□□□□□ -1.22
SCN1A-215ENST00000637285 FBLN2P98095 1184 aa7.41□□□□□ -1.22
SCN1A-215ENST00000637285 SPDYE2BA6NHP3 402 aa7.4□□□□□ -1.22
SCN1A-215ENST00000637285 SPDYE6P0CI01 402 aa7.4□□□□□ -1.22
SCN1A-215ENST00000637285 SPDYE2Q495Y8 402 aa7.4□□□□□ -1.22
SCN1A-215ENST00000637285 CLEC11AQ9Y240 323 aa7.4□□□□□ -1.22
SCN1A-215ENST00000637285 PRKAR2AP13861 404 aaKnown RBP7.38□□□□□ -1.23
SCN1A-215ENST00000637285 ATXN8OSP0DMR3 200 aa7.37□□□□□ -1.23
SCN1A-215ENST00000637285 SPDYE1Q8NFV5 336 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-215ENST00000637285 ZNF692Q9BU19 519 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-215ENST00000637285 MKRN4PQ13434 485 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-215ENST00000637285 C19orf67A6NJJ6 358 aa7.29□□□□□ -1.24
SCN1A-215ENST00000637285 CHADLQ6NUI6 762 aa7.27□□□□□ -1.25
SCN1A-215ENST00000637285 GABBR2O75899 941 aa7.26□□□□□ -1.25
SCN1A-215ENST00000637285 SSUH2Q9Y2M2 353 aa7.26□□□□□ -1.25
SCN1A-215ENST00000637285 PRR29P0C7W0 189 aa7.22□□□□□ -1.25
SCN1A-215ENST00000637285 LHX8Q68G74 356 aa7.21□□□□□ -1.26
SCN1A-215ENST00000637285 PABPN1Q86U42 306 aaKnown RBP eCLIP7.2□□□□□ -1.26
SCN1A-215ENST00000637285 CD44P16070 742 aaKnown RBP7.14□□□□□ -1.27
SCN1A-215ENST00000637285 FARP1Q9Y4F1 1045 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-215ENST00000637285 POTEIP0CG38 1075 aa7.09□□□□□ -1.27
SCN1A-215ENST00000637285 DCBLD2Q96PD2 775 aa7.04□□□□□ -1.28
SCN1A-215ENST00000637285 CLCN6P51797 869 aa7.01□□□□□ -1.29
SCN1A-215ENST00000637285 ZRANB1Q9UGI0 708 aa7.01□□□□□ -1.29
SCN1A-215ENST00000637285 PLSCR2Q9NRY7 297 aa7□□□□□ -1.29
SCN1A-215ENST00000637285 ZNF579Q8NAF0 562 aaKnown RBP6.97□□□□□ -1.29
SCN1A-215ENST00000637285 CREBZFQ9NS37 354 aa6.95□□□□□ -1.3
SCN1A-215ENST00000637285 GALR2O43603 387 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-215ENST00000637285 STAG3Q9UJ98 1225 aa6.93□□□□□ -1.3
SCN1A-215ENST00000637285 PAK3O75914 559 aaPredicted RBP6.9□□□□□ -1.3
SCN1A-215ENST00000637285 CSRNP3Q8WYN3 585 aa6.89□□□□□ -1.31
SCN1A-215ENST00000637285 PHF12Q96QT6 1004 aa6.89□□□□□ -1.31
SCN1A-215ENST00000637285 OTUD5Q96G74 571 aa6.88□□□□□ -1.31
SCN1A-215ENST00000637285 SPDYE4A6NLX3 237 aa6.86□□□□□ -1.31
SCN1A-215ENST00000637285 POTEB2H3BUK9 544 aa6.86□□□□□ -1.31
SCN1A-215ENST00000637285 NPM1P06748 294 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-215ENST00000637285 PELP1Q8IZL8 1130 aaKnown RBP6.82□□□□□ -1.32
SCN1A-215ENST00000637285 POTEMA6NI47 508 aa6.81□□□□□ -1.32
SCN1A-215ENST00000637285 POTEGQ6S5H5 508 aa6.79□□□□□ -1.32
SCN1A-215ENST00000637285 MS4A3Q96HJ5 214 aa6.78□□□□□ -1.32
SCN1A-215ENST00000637285 MNX1P50219 401 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-215ENST00000637285 METRNQ9UJH8 293 aa6.77□□□□□ -1.33
SCN1A-215ENST00000637285 EHMT2Q96KQ7 1210 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms