RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 HSP90AB2PQ58FF8 381 aa27.6■■■□□ 2.01
CLN3-245ENST00000636172 COL18A1P39060 1754 aa27.6■■■□□ 2.01
CLN3-245ENST00000636172 IP6K1Q92551 441 aa27.59■■■□□ 2.01
CLN3-245ENST00000636172 ABCC6O95255 1503 aa27.58■■■□□ 2
CLN3-245ENST00000636172 DIAPH1O60610 1272 aaKnown RBP27.57■■■□□ 2
CLN3-245ENST00000636172 RGPD5Q99666 1765 aa27.55■■■□□ 2
CLN3-245ENST00000636172 IL13P35225 146 aa27.54■■■□□ 2
CLN3-245ENST00000636172 CHRNA2Q15822 529 aa27.54■■■□□ 2
CLN3-245ENST00000636172 FAM9BQ8IZU0 186 aa27.54■■■□□ 2
CLN3-245ENST00000636172 LMO7Q8WWI1 1683 aa27.54■■■□□ 2
CLN3-245ENST00000636172 BLMP54132 1417 aaPredicted RBP27.54■■■□□ 2
CLN3-245ENST00000636172 EIF4A2Q14240 407 aaKnown RBP27.53■■■□□ 2
CLN3-245ENST00000636172 PRDM11Q9NQV5 511 aa27.53■■■□□ 2
CLN3-245ENST00000636172 AXIN2Q9Y2T1 843 aa27.52■■■□□ 2
CLN3-245ENST00000636172 WDR43Q15061 677 aaKnown RBP eCLIP27.51■■■□□ 2
CLN3-245ENST00000636172 RGPD1P0DJD0 1748 aa27.5■■□□□ 1.99
CLN3-245ENST00000636172 NUTM2BA6NNL0 878 aaPredicted RBP27.5■■□□□ 1.99
CLN3-245ENST00000636172 NUTM2EB1AL46 878 aaPredicted RBP27.5■■□□□ 1.99
CLN3-245ENST00000636172 NUTM2AQ8IVF1 878 aaPredicted RBP27.5■■□□□ 1.99
CLN3-245ENST00000636172 NUDCQ9Y266 331 aa27.5■■□□□ 1.99
CLN3-245ENST00000636172 COL14A1Q05707 1796 aaKnown RBP27.49■■□□□ 1.99
CLN3-245ENST00000636172 SPATA31A6Q5VVP1 1343 aa27.49■■□□□ 1.99
CLN3-245ENST00000636172 FAM83GA6ND36 823 aa27.48■■□□□ 1.99
CLN3-245ENST00000636172 SOCS7O14512 581 aa27.48■■□□□ 1.99
CLN3-245ENST00000636172 ADAMTS8Q9UP79 889 aa27.48■■□□□ 1.99
CLN3-245ENST00000636172 CAMTA1Q9Y6Y1 1673 aa27.47■■□□□ 1.99
CLN3-245ENST00000636172 U2SURPO15042 1029 aaKnown RBP27.47■■□□□ 1.99
CLN3-245ENST00000636172 ADAMTS2O95450 1211 aa27.46■■□□□ 1.99
CLN3-245ENST00000636172 LTV1Q96GA3 475 aaPredicted RBP27.46■■□□□ 1.99
CLN3-245ENST00000636172 LRP6O75581 1613 aa27.45■■□□□ 1.99
CLN3-245ENST00000636172 U2AF1L5P0DN76 240 aaPredicted RBP27.45■■□□□ 1.98
CLN3-245ENST00000636172 U2AF1Q01081 240 aaKnown RBP eCLIP27.45■■□□□ 1.98
CLN3-245ENST00000636172 ANKRD24Q8TF21 1146 aa27.45■■□□□ 1.98
CLN3-245ENST00000636172 ERBB3P21860 1342 aa27.44■■□□□ 1.98
CLN3-245ENST00000636172 RGPD2P0DJD1 1756 aa27.43■■□□□ 1.98
CLN3-245ENST00000636172 PLCH1Q4KWH8 1693 aa27.43■■□□□ 1.98
CLN3-245ENST00000636172 COL5A2P05997 1499 aaPredicted RBP27.43■■□□□ 1.98
CLN3-245ENST00000636172 FAM208AQ9UK61 1670 aaKnown RBP27.41■■□□□ 1.98
CLN3-245ENST00000636172 EYA1Q99502 592 aa27.41■■□□□ 1.98
CLN3-245ENST00000636172 IGSF1Q8N6C5 1336 aa27.4■■□□□ 1.98
CLN3-245ENST00000636172 BTG4Q9NY30 223 aa27.38■■□□□ 1.97
CLN3-245ENST00000636172 HMOX1P09601 288 aa27.37■■□□□ 1.97
CLN3-245ENST00000636172 NBPF6Q5VWK0 638 aa27.37■■□□□ 1.97
CLN3-245ENST00000636172 NBPF4Q96M43 638 aa27.37■■□□□ 1.97
CLN3-245ENST00000636172 AEBP1Q8IUX7 1158 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 NRAPQ86VF7 1730 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 NWD2Q9ULI1 1742 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 NCAPD2Q15021 1401 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 SULT6B1Q6IMI4 303 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 RSPH6AQ9H0K4 717 aa27.36■■□□□ 1.97
CLN3-245ENST00000636172 KDRP35968 1356 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 FCHSD2O94868 740 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 CSB-PGBD3P0DP91 1061 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 CCDC146Q8IYE0 955 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 WDR17Q8IZU2 1322 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 SLIT2O94813 1529 aa27.35■■□□□ 1.97
CLN3-245ENST00000636172 USHBP1Q8N6Y0 703 aa27.34■■□□□ 1.97
CLN3-245ENST00000636172 PLEKHF1Q96S99 279 aa27.32■■□□□ 1.96
CLN3-245ENST00000636172 STRN4Q9NRL3 753 aa27.32■■□□□ 1.96
CLN3-245ENST00000636172 YTHDC1Q96MU7 727 aaKnown RBP27.31■■□□□ 1.96
CLN3-245ENST00000636172 C8orf37Q96NL8 207 aa27.31■■□□□ 1.96
CLN3-245ENST00000636172 NLRP2Q9NX02 1062 aa27.31■■□□□ 1.96
CLN3-245ENST00000636172 PRKAR2BP31323 418 aa27.31■■□□□ 1.96
CLN3-245ENST00000636172 EVA1CP58658 441 aa27.31■■□□□ 1.96
CLN3-245ENST00000636172 RUNDC1Q96C34 613 aa27.31■■□□□ 1.96
CLN3-245ENST00000636172 LARP1Q6PKG0 1096 aaKnown RBP27.3■■□□□ 1.96
CLN3-245ENST00000636172 PNNQ9H307 717 aaKnown RBP27.29■■□□□ 1.96
CLN3-245ENST00000636172 MEX3CQ5U5Q3 659 aaKnown RBP27.28■■□□□ 1.96
CLN3-245ENST00000636172 NGLY1Q96IV0 654 aa27.28■■□□□ 1.96
CLN3-245ENST00000636172 TOM1L2Q6ZVM7 507 aa27.27■■□□□ 1.96
CLN3-245ENST00000636172 PHF23Q9BUL5 403 aaPredicted RBP27.27■■□□□ 1.96
CLN3-245ENST00000636172 CRB1P82279 1406 aa27.27■■□□□ 1.96
CLN3-245ENST00000636172 RGS17Q9UGC6 210 aaPredicted RBP27.26■■□□□ 1.96
CLN3-245ENST00000636172 SENP3-EIF4A1A0A087X0R7 540 aa27.26■■□□□ 1.95
CLN3-245ENST00000636172 HNRNPUQ00839 825 aaKnown RBP eCLIP27.26■■□□□ 1.95
CLN3-245ENST00000636172 FNBP4Q8N3X1 1017 aaPredicted RBP27.26■■□□□ 1.95
CLN3-245ENST00000636172 BCL9LQ86UU0 1499 aa27.25■■□□□ 1.95
CLN3-245ENST00000636172 CARD10Q9BWT7 1032 aa27.25■■□□□ 1.95
CLN3-245ENST00000636172 MAPK8IP3Q9UPT6 1336 aa27.24■■□□□ 1.95
CLN3-245ENST00000636172 APAF1O14727 1248 aa27.24■■□□□ 1.95
CLN3-245ENST00000636172 PHACTR3Q96KR7 559 aa27.24■■□□□ 1.95
CLN3-245ENST00000636172 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.23■■□□□ 1.95
CLN3-245ENST00000636172 TCP11L2Q8N4U5 519 aa27.22■■□□□ 1.95
CLN3-245ENST00000636172 UNC5CLQ8IV45 518 aa27.21■■□□□ 1.95
CLN3-245ENST00000636172 MEGF6O75095 1541 aa27.2■■□□□ 1.94
CLN3-245ENST00000636172 NEFMP07197 916 aa27.2■■□□□ 1.94
CLN3-245ENST00000636172 AFF2P51816 1311 aa27.18■■□□□ 1.94
CLN3-245ENST00000636172 USP21Q9UK80 565 aa27.18■■□□□ 1.94
CLN3-245ENST00000636172 RRP7AQ9Y3A4 280 aaKnown RBP27.17■■□□□ 1.94
CLN3-245ENST00000636172 PARP4Q9UKK3 1724 aaKnown RBP27.17■■□□□ 1.94
CLN3-245ENST00000636172 RAPGEF4Q8WZA2 1011 aa27.16■■□□□ 1.94
CLN3-245ENST00000636172 USP35Q9P2H5 1018 aa27.16■■□□□ 1.94
CLN3-245ENST00000636172 TMPOP42166 694 aaKnown RBP27.16■■□□□ 1.94
CLN3-245ENST00000636172 WNK3Q9BYP7 1800 aa27.15■■□□□ 1.94
CLN3-245ENST00000636172 SPATA31A1Q5TZJ5 1347 aa27.15■■□□□ 1.94
CLN3-245ENST00000636172 SPATA31A5Q5VU36 1347 aa27.15■■□□□ 1.94
CLN3-245ENST00000636172 SPATA31A7Q8IWB4 1347 aa27.15■■□□□ 1.94
CLN3-245ENST00000636172 NFE2L2Q16236 605 aa27.15■■□□□ 1.94
CLN3-245ENST00000636172 SALL2Q9Y467 1007 aaPredicted RBP27.15■■□□□ 1.94
CLN3-245ENST00000636172 DLG5Q8TDM6 1919 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms