RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 GLI3P10071 1580 aa13.39□□□□□ -0.27
LINC00339-210ENST00000635675 SPATA31A5Q5VU36 1347 aa13.39□□□□□ -0.27
LINC00339-210ENST00000635675 SPATA31A7Q8IWB4 1347 aa13.39□□□□□ -0.27
LINC00339-210ENST00000635675 PER1O15534 1290 aaPredicted RBP13.39□□□□□ -0.27
LINC00339-210ENST00000635675 COL5A2P05997 1499 aaPredicted RBP13.38□□□□□ -0.27
LINC00339-210ENST00000635675 ONECUT3O60422 494 aaPredicted RBP13.38□□□□□ -0.27
LINC00339-210ENST00000635675 CCDC9Q9Y3X0 531 aaKnown RBP13.38□□□□□ -0.27
LINC00339-210ENST00000635675 KNSTRNQ9Y448 316 aa13.38□□□□□ -0.27
LINC00339-210ENST00000635675 LTN1O94822 1766 aa13.37□□□□□ -0.27
LINC00339-210ENST00000635675 MAP3K19Q56UN5 1328 aa13.37□□□□□ -0.27
LINC00339-210ENST00000635675 RGS12O14924 1447 aa13.37□□□□□ -0.27
LINC00339-210ENST00000635675 RGPD5Q99666 1765 aa13.37□□□□□ -0.27
LINC00339-210ENST00000635675 ABCC6O95255 1503 aa13.37□□□□□ -0.27
LINC00339-210ENST00000635675 LARP1Q6PKG0 1096 aaKnown RBP13.37□□□□□ -0.27
LINC00339-210ENST00000635675 SPATA31A1Q5TZJ5 1347 aa13.36□□□□□ -0.27
LINC00339-210ENST00000635675 AMER1Q5JTC6 1135 aaPredicted RBP13.36□□□□□ -0.27
LINC00339-210ENST00000635675 IP6K1Q92551 441 aa13.36□□□□□ -0.27
LINC00339-210ENST00000635675 NSD2O96028 1365 aa13.35□□□□□ -0.27
LINC00339-210ENST00000635675 WDR17Q8IZU2 1322 aa13.35□□□□□ -0.27
LINC00339-210ENST00000635675 RRS1Q15050 365 aaKnown RBP13.34□□□□□ -0.27
LINC00339-210ENST00000635675 ANKRD26Q9UPS8 1709 aa13.34□□□□□ -0.27
LINC00339-210ENST00000635675 CRB1P82279 1406 aa13.34□□□□□ -0.27
LINC00339-210ENST00000635675 SOCS7O14512 581 aa13.33□□□□□ -0.28
LINC00339-210ENST00000635675 HOXC9P31274 260 aa13.33□□□□□ -0.28
LINC00339-210ENST00000635675 AMPHP49418 695 aa13.33□□□□□ -0.28
LINC00339-210ENST00000635675 FAM98CQ17RN3 349 aaKnown RBP13.33□□□□□ -0.28
LINC00339-210ENST00000635675 SEPT12Q8IYM1 358 aa13.33□□□□□ -0.28
LINC00339-210ENST00000635675 BLMP54132 1417 aaPredicted RBP13.33□□□□□ -0.28
LINC00339-210ENST00000635675 ERBB3P21860 1342 aa13.33□□□□□ -0.28
LINC00339-210ENST00000635675 BARGINQ6ZT62 677 aa13.32□□□□□ -0.28
LINC00339-210ENST00000635675 TCP11L2Q8N4U5 519 aa13.32□□□□□ -0.28
LINC00339-210ENST00000635675 USP35Q9P2H5 1018 aa13.32□□□□□ -0.28
LINC00339-210ENST00000635675 THRAP3Q9Y2W1 955 aaKnown RBP13.32□□□□□ -0.28
LINC00339-210ENST00000635675 RTL1A6NKG5 1358 aa13.32□□□□□ -0.28
LINC00339-210ENST00000635675 KIF24Q5T7B8 1368 aa13.32□□□□□ -0.28
LINC00339-210ENST00000635675 CSB-PGBD3P0DP91 1061 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 TOM1L2Q6ZVM7 507 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 MORC1Q86VD1 984 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 ANKRD24Q8TF21 1146 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 CARD10Q9BWT7 1032 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 MAP2P11137 1827 aaKnown RBP13.31□□□□□ -0.28
LINC00339-210ENST00000635675 NPC1L1Q9UHC9 1359 aa13.31□□□□□ -0.28
LINC00339-210ENST00000635675 POLKQ9UBT6 870 aa13.3□□□□□ -0.28
LINC00339-210ENST00000635675 EMILIN1Q9Y6C2 1016 aa13.3□□□□□ -0.28
LINC00339-210ENST00000635675 PEAK1Q9H792 1746 aa13.3□□□□□ -0.28
LINC00339-210ENST00000635675 TNNT2P45379 298 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-210ENST00000635675 HSP90AB2PQ58FF8 381 aa13.3□□□□□ -0.28
LINC00339-210ENST00000635675 THSD7AQ9UPZ6 1657 aa13.29□□□□□ -0.28
LINC00339-210ENST00000635675 FLT4P35916 1363 aa13.29□□□□□ -0.28
LINC00339-210ENST00000635675 BRWD3Q6RI45 1802 aa13.29□□□□□ -0.28
LINC00339-210ENST00000635675 INSRP06213 1382 aa13.28□□□□□ -0.28
LINC00339-210ENST00000635675 CC2D1BQ5T0F9 858 aaKnown RBP13.28□□□□□ -0.28
LINC00339-210ENST00000635675 LTV1Q96GA3 475 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-210ENST00000635675 NLRP2Q9NX02 1062 aa13.28□□□□□ -0.28
LINC00339-210ENST00000635675 A0A0G2JS52 829 aa13.27□□□□□ -0.29
LINC00339-210ENST00000635675 PPM1GO15355 546 aaPredicted RBP13.27□□□□□ -0.29
LINC00339-210ENST00000635675 MYT1Q01538 1121 aa13.27□□□□□ -0.29
LINC00339-210ENST00000635675 KRT27Q7Z3Y8 459 aa13.26□□□□□ -0.29
LINC00339-210ENST00000635675 CDCA7Q9BWT1 371 aaPredicted RBP13.25□□□□□ -0.29
LINC00339-210ENST00000635675 DISP2A7MBM2 1401 aa13.25□□□□□ -0.29
LINC00339-210ENST00000635675 SMG6Q86US8 1419 aaKnown RBP13.25□□□□□ -0.29
LINC00339-210ENST00000635675 FAM208AQ9UK61 1670 aaKnown RBP13.25□□□□□ -0.29
LINC00339-210ENST00000635675 NBPF6Q5VWK0 638 aa13.24□□□□□ -0.29
LINC00339-210ENST00000635675 NBPF4Q96M43 638 aa13.24□□□□□ -0.29
LINC00339-210ENST00000635675 PARP4Q9UKK3 1724 aaKnown RBP13.24□□□□□ -0.29
LINC00339-210ENST00000635675 RGPD2P0DJD1 1756 aa13.24□□□□□ -0.29
LINC00339-210ENST00000635675 DDX10Q13206 875 aaKnown RBP13.23□□□□□ -0.29
LINC00339-210ENST00000635675 UPF1Q92900 1129 aaKnown RBP eCLIP13.23□□□□□ -0.29
LINC00339-210ENST00000635675 WNK3Q9BYP7 1800 aa13.23□□□□□ -0.29
LINC00339-210ENST00000635675 PDE3BQ13370 1112 aa13.22□□□□□ -0.29
LINC00339-210ENST00000635675 CNGB1Q14028 1251 aaPredicted RBP13.22□□□□□ -0.29
LINC00339-210ENST00000635675 IL2RBP14784 551 aa13.22□□□□□ -0.29
LINC00339-210ENST00000635675 MTHFSP49914 203 aa13.22□□□□□ -0.29
LINC00339-210ENST00000635675 DDB1Q16531 1140 aa13.22□□□□□ -0.29
LINC00339-210ENST00000635675 EIF4A2Q14240 407 aaKnown RBP13.21□□□□□ -0.3
LINC00339-210ENST00000635675 FAM182BQ5T319 152 aa13.21□□□□□ -0.3
LINC00339-210ENST00000635675 LRRC37A3O60309 1634 aa13.21□□□□□ -0.3
LINC00339-210ENST00000635675 ZNF316A6NFI3 1004 aaPredicted RBP13.2□□□□□ -0.3
LINC00339-210ENST00000635675 EXOC5O00471 708 aa13.2□□□□□ -0.3
LINC00339-210ENST00000635675 USHBP1Q8N6Y0 703 aa13.2□□□□□ -0.3
LINC00339-210ENST00000635675 EYA1Q99502 592 aa13.2□□□□□ -0.3
LINC00339-210ENST00000635675 NCAPD2Q15021 1401 aa13.19□□□□□ -0.3
LINC00339-210ENST00000635675 FAM196AQ6ZSG2 479 aa13.19□□□□□ -0.3
LINC00339-210ENST00000635675 MARCH10Q8NA82 808 aaPredicted RBP13.18□□□□□ -0.3
LINC00339-210ENST00000635675 EP400Q96L91 3159 aa13.18□□□□□ -0.3
LINC00339-210ENST00000635675 IL13P35225 146 aa13.17□□□□□ -0.3
LINC00339-210ENST00000635675 CCDC125Q86Z20 511 aa13.17□□□□□ -0.3
LINC00339-210ENST00000635675 TNS2Q63HR2 1409 aa13.17□□□□□ -0.3
LINC00339-210ENST00000635675 PARD3Q8TEW0 1356 aa13.17□□□□□ -0.3
LINC00339-210ENST00000635675 MEGF6O75095 1541 aa13.17□□□□□ -0.3
LINC00339-210ENST00000635675 IGSF1Q8N6C5 1336 aa13.16□□□□□ -0.3
LINC00339-210ENST00000635675 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
LINC00339-210ENST00000635675 RAPGEF4Q8WZA2 1011 aa13.16□□□□□ -0.3
LINC00339-210ENST00000635675 OVOS2A0A0G2JMS6 1433 aa13.16□□□□□ -0.3
LINC00339-210ENST00000635675 BCL9O00512 1426 aa13.15□□□□□ -0.31
LINC00339-210ENST00000635675 TATP17735 454 aaPredicted RBP13.14□□□□□ -0.31
LINC00339-210ENST00000635675 ZCRB1Q8TBF4 217 aaKnown RBP13.14□□□□□ -0.31
LINC00339-210ENST00000635675 DIAPH1O60610 1272 aaKnown RBP13.13□□□□□ -0.31
LINC00339-210ENST00000635675 RGPD1P0DJD0 1748 aa13.13□□□□□ -0.31
LINC00339-210ENST00000635675 COL3A1P02461 1466 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms