RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GGNBP2Q9H3C7 697 aa28.54■■■□□ 2.16
CLN3-240ENST00000631023 CGNL1Q0VF96 1302 aa28.53■■■□□ 2.16
CLN3-240ENST00000631023 COL5A2P05997 1499 aaPredicted RBP28.52■■■□□ 2.16
CLN3-240ENST00000631023 ABCC6O95255 1503 aa28.51■■■□□ 2.16
CLN3-240ENST00000631023 ONECUT3O60422 494 aaPredicted RBP28.5■■■□□ 2.15
CLN3-240ENST00000631023 AXIN2Q9Y2T1 843 aa28.5■■■□□ 2.15
CLN3-240ENST00000631023 SPATA31A1Q5TZJ5 1347 aa28.5■■■□□ 2.15
CLN3-240ENST00000631023 LARP1Q6PKG0 1096 aaKnown RBP28.5■■■□□ 2.15
CLN3-240ENST00000631023 FAM98CQ17RN3 349 aaKnown RBP28.48■■■□□ 2.15
CLN3-240ENST00000631023 BRWD3Q6RI45 1802 aa28.48■■■□□ 2.15
CLN3-240ENST00000631023 A0A0G2JS52 829 aa28.47■■■□□ 2.15
CLN3-240ENST00000631023 MYT1Q01538 1121 aa28.47■■■□□ 2.15
CLN3-240ENST00000631023 SEPT12Q8IYM1 358 aa28.47■■■□□ 2.15
CLN3-240ENST00000631023 USP35Q9P2H5 1018 aa28.46■■■□□ 2.15
CLN3-240ENST00000631023 CCDC7Q96M83 1385 aa28.46■■■□□ 2.15
CLN3-240ENST00000631023 ZEB1P37275 1124 aaPredicted RBP28.45■■■□□ 2.15
CLN3-240ENST00000631023 CRB1P82279 1406 aa28.45■■■□□ 2.15
CLN3-240ENST00000631023 WDR17Q8IZU2 1322 aa28.44■■■□□ 2.14
CLN3-240ENST00000631023 CSB-PGBD3P0DP91 1061 aa28.44■■■□□ 2.14
CLN3-240ENST00000631023 TOM1L2Q6ZVM7 507 aa28.44■■■□□ 2.14
CLN3-240ENST00000631023 TCP11L2Q8N4U5 519 aa28.44■■■□□ 2.14
CLN3-240ENST00000631023 THRAP3Q9Y2W1 955 aaKnown RBP28.44■■■□□ 2.14
CLN3-240ENST00000631023 ANKRD26Q9UPS8 1709 aa28.43■■■□□ 2.14
CLN3-240ENST00000631023 KNSTRNQ9Y448 316 aa28.43■■■□□ 2.14
CLN3-240ENST00000631023 WASHC2AQ641Q2 1341 aa28.42■■■□□ 2.14
CLN3-240ENST00000631023 AMPHP49418 695 aa28.42■■■□□ 2.14
CLN3-240ENST00000631023 MAP3K19Q56UN5 1328 aa28.42■■■□□ 2.14
CLN3-240ENST00000631023 BARGINQ6ZT62 677 aa28.41■■■□□ 2.14
CLN3-240ENST00000631023 IP6K1Q92551 441 aa28.41■■■□□ 2.14
CLN3-240ENST00000631023 MAP2P11137 1827 aaKnown RBP28.41■■■□□ 2.14
CLN3-240ENST00000631023 FBLN1P23142 703 aa28.41■■■□□ 2.14
CLN3-240ENST00000631023 BLMP54132 1417 aaPredicted RBP28.4■■■□□ 2.14
CLN3-240ENST00000631023 NSD2O96028 1365 aa28.38■■■□□ 2.13
CLN3-240ENST00000631023 RRS1Q15050 365 aaKnown RBP28.38■■■□□ 2.13
CLN3-240ENST00000631023 ERBB3P21860 1342 aa28.38■■■□□ 2.13
CLN3-240ENST00000631023 THSD7AQ9UPZ6 1657 aa28.38■■■□□ 2.13
CLN3-240ENST00000631023 CARD10Q9BWT7 1032 aa28.37■■■□□ 2.13
CLN3-240ENST00000631023 HOXC9P31274 260 aa28.36■■■□□ 2.13
CLN3-240ENST00000631023 KRT27Q7Z3Y8 459 aa28.36■■■□□ 2.13
CLN3-240ENST00000631023 ANKRD24Q8TF21 1146 aa28.36■■■□□ 2.13
CLN3-240ENST00000631023 RTL1A6NKG5 1358 aa28.35■■■□□ 2.13
CLN3-240ENST00000631023 KIF24Q5T7B8 1368 aa28.33■■■□□ 2.13
CLN3-240ENST00000631023 FAM208AQ9UK61 1670 aaKnown RBP28.33■■■□□ 2.13
CLN3-240ENST00000631023 NLRP2Q9NX02 1062 aa28.33■■■□□ 2.12
CLN3-240ENST00000631023 UPF1Q92900 1129 aaKnown RBP eCLIP28.32■■■□□ 2.12
CLN3-240ENST00000631023 LTV1Q96GA3 475 aaPredicted RBP28.31■■■□□ 2.12
CLN3-240ENST00000631023 WNK3Q9BYP7 1800 aa28.31■■■□□ 2.12
CLN3-240ENST00000631023 CDCA7Q9BWT1 371 aaPredicted RBP28.3■■■□□ 2.12
CLN3-240ENST00000631023 EP400Q96L91 3159 aa28.3■■■□□ 2.12
CLN3-240ENST00000631023 PARP4Q9UKK3 1724 aaKnown RBP28.3■■■□□ 2.12
CLN3-240ENST00000631023 PER1O15534 1290 aaPredicted RBP28.29■■■□□ 2.12
CLN3-240ENST00000631023 MORC1Q86VD1 984 aa28.29■■■□□ 2.12
CLN3-240ENST00000631023 FLT4P35916 1363 aa28.29■■■□□ 2.12
CLN3-240ENST00000631023 TNNT2P45379 298 aaPredicted RBP28.28■■■□□ 2.12
CLN3-240ENST00000631023 PPM1GO15355 546 aaPredicted RBP28.28■■■□□ 2.12
CLN3-240ENST00000631023 PDE3BQ13370 1112 aa28.28■■■□□ 2.12
CLN3-240ENST00000631023 AMER1Q5JTC6 1135 aaPredicted RBP28.28■■■□□ 2.12
CLN3-240ENST00000631023 EMILIN1Q9Y6C2 1016 aa28.27■■■□□ 2.12
CLN3-240ENST00000631023 PEAK1Q9H792 1746 aa28.27■■■□□ 2.12
CLN3-240ENST00000631023 SMG6Q86US8 1419 aaKnown RBP28.26■■■□□ 2.11
CLN3-240ENST00000631023 RGPD2P0DJD1 1756 aa28.25■■■□□ 2.11
CLN3-240ENST00000631023 INSRP06213 1382 aa28.25■■■□□ 2.11
CLN3-240ENST00000631023 HSP90AB2PQ58FF8 381 aa28.24■■■□□ 2.11
CLN3-240ENST00000631023 POLKQ9UBT6 870 aa28.24■■■□□ 2.11
CLN3-240ENST00000631023 CCDC125Q86Z20 511 aa28.24■■■□□ 2.11
CLN3-240ENST00000631023 DDB1Q16531 1140 aa28.23■■■□□ 2.11
CLN3-240ENST00000631023 IL2RBP14784 551 aa28.2■■■□□ 2.1
CLN3-240ENST00000631023 LRRC37A3O60309 1634 aa28.2■■■□□ 2.1
CLN3-240ENST00000631023 NPC1L1Q9UHC9 1359 aa28.19■■■□□ 2.1
CLN3-240ENST00000631023 DISP2A7MBM2 1401 aa28.19■■■□□ 2.1
CLN3-240ENST00000631023 EXOC5O00471 708 aa28.19■■■□□ 2.1
CLN3-240ENST00000631023 CC2D1BQ5T0F9 858 aaKnown RBP28.19■■■□□ 2.1
CLN3-240ENST00000631023 FAM196AQ6ZSG2 479 aa28.19■■■□□ 2.1
CLN3-240ENST00000631023 FAM182BQ5T319 152 aa28.18■■■□□ 2.1
CLN3-240ENST00000631023 SF3B2Q13435 895 aaKnown RBP28.15■■■□□ 2.1
CLN3-240ENST00000631023 NBPF6Q5VWK0 638 aa28.15■■■□□ 2.1
CLN3-240ENST00000631023 NBPF4Q96M43 638 aa28.15■■■□□ 2.1
CLN3-240ENST00000631023 KAT6BQ8WYB5 2073 aa28.14■■■□□ 2.1
CLN3-240ENST00000631023 RGPD1P0DJD0 1748 aa28.11■■■□□ 2.09
CLN3-240ENST00000631023 CNGB1Q14028 1251 aaPredicted RBP28.11■■■□□ 2.09
CLN3-240ENST00000631023 TNS2Q63HR2 1409 aa28.1■■■□□ 2.09
CLN3-240ENST00000631023 OVOS2A0A0G2JMS6 1433 aa28.1■■■□□ 2.09
CLN3-240ENST00000631023 RAPGEF4Q8WZA2 1011 aa28.08■■■□□ 2.09
CLN3-240ENST00000631023 SBF2Q86WG5 1849 aa28.07■■■□□ 2.08
CLN3-240ENST00000631023 USHBP1Q8N6Y0 703 aa28.07■■■□□ 2.08
CLN3-240ENST00000631023 MARCH10Q8NA82 808 aaPredicted RBP28.07■■■□□ 2.08
CLN3-240ENST00000631023 EIF4A2Q14240 407 aaKnown RBP28.07■■■□□ 2.08
CLN3-240ENST00000631023 MTHFSP49914 203 aa28.06■■■□□ 2.08
CLN3-240ENST00000631023 TRIM37O94972 964 aa28.05■■■□□ 2.08
CLN3-240ENST00000631023 EYA1Q99502 592 aa28.05■■■□□ 2.08
CLN3-240ENST00000631023 TATP17735 454 aaPredicted RBP28.04■■■□□ 2.08
CLN3-240ENST00000631023 ZCRB1Q8TBF4 217 aaKnown RBP28.03■■■□□ 2.08
CLN3-240ENST00000631023 BCL9O00512 1426 aa28.02■■■□□ 2.08
CLN3-240ENST00000631023 MEGF6O75095 1541 aa28.01■■■□□ 2.08
CLN3-240ENST00000631023 BAG6P46379 1132 aa28.01■■■□□ 2.07
CLN3-240ENST00000631023 DDX10Q13206 875 aaKnown RBP28.01■■■□□ 2.07
CLN3-240ENST00000631023 TNS1Q9HBL0 1735 aaKnown RBP28.01■■■□□ 2.07
CLN3-240ENST00000631023 NCAPD2Q15021 1401 aa28■■■□□ 2.07
CLN3-240ENST00000631023 DDX54Q8TDD1 881 aaKnown RBP28■■■□□ 2.07
CLN3-240ENST00000631023 DEFB132Q7Z7B7 95 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms