RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 RXRBP28702 533 aa12.06□□□□□ -0.48
SMAD4-217ENST00000611848 RBM6P78332 1123 aaKnown RBP12.06□□□□□ -0.48
SMAD4-217ENST00000611848 AATKQ6ZMQ8 1374 aa12.06□□□□□ -0.48
SMAD4-217ENST00000611848 VPS72Q15906 364 aa12.05□□□□□ -0.48
SMAD4-217ENST00000611848 KNSTRNQ9Y448 316 aa12.05□□□□□ -0.48
SMAD4-217ENST00000611848 NRAPQ86VF7 1730 aa12.05□□□□□ -0.48
SMAD4-217ENST00000611848 ZBTB7CA1YPR0 619 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 LMO7Q8WWI1 1683 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 LTN1O94822 1766 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 COL18A1P39060 1754 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 ABCC6O95255 1503 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 EVA1CP58658 441 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 ILDR2Q71H61 639 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 GJD4Q96KN9 370 aaPredicted RBP12.04□□□□□ -0.48
SMAD4-217ENST00000611848 FOXD4L1Q9NU39 408 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
SMAD4-217ENST00000611848 CAMTA1Q9Y6Y1 1673 aa12.03□□□□□ -0.48
SMAD4-217ENST00000611848 NSD2O96028 1365 aa12.03□□□□□ -0.48
SMAD4-217ENST00000611848 ANKRD26Q9UPS8 1709 aa12.02□□□□□ -0.48
SMAD4-217ENST00000611848 PER1O15534 1290 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-217ENST00000611848 STRN4Q9NRL3 753 aa12.02□□□□□ -0.49
SMAD4-217ENST00000611848 CCDC9Q9Y3X0 531 aaKnown RBP12.02□□□□□ -0.49
SMAD4-217ENST00000611848 CDK12Q9NYV4 1490 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-217ENST00000611848 AXIN2Q9Y2T1 843 aa12.01□□□□□ -0.49
SMAD4-217ENST00000611848 RGPD5Q99666 1765 aa12.01□□□□□ -0.49
SMAD4-217ENST00000611848 COL5A2P05997 1499 aaPredicted RBP12□□□□□ -0.49
SMAD4-217ENST00000611848 AMER1Q5JTC6 1135 aaPredicted RBP12□□□□□ -0.49
SMAD4-217ENST00000611848 MAP2P11137 1827 aaKnown RBP12□□□□□ -0.49
SMAD4-217ENST00000611848 MAP3K19Q56UN5 1328 aa12□□□□□ -0.49
SMAD4-217ENST00000611848 SPATA31A5Q5VU36 1347 aa12□□□□□ -0.49
SMAD4-217ENST00000611848 SPATA31A7Q8IWB4 1347 aa12□□□□□ -0.49
SMAD4-217ENST00000611848 AMPHP49418 695 aa12□□□□□ -0.49
SMAD4-217ENST00000611848 IP6K1Q92551 441 aa12□□□□□ -0.49
SMAD4-217ENST00000611848 GLI3P10071 1580 aa11.99□□□□□ -0.49
SMAD4-217ENST00000611848 CCER2I3L3R5 266 aa11.99□□□□□ -0.49
SMAD4-217ENST00000611848 FBLN1P23142 703 aa11.99□□□□□ -0.49
SMAD4-217ENST00000611848 LARP1Q6PKG0 1096 aaKnown RBP11.99□□□□□ -0.49
SMAD4-217ENST00000611848 BLMP54132 1417 aaPredicted RBP11.98□□□□□ -0.49
SMAD4-217ENST00000611848 RTL1A6NKG5 1358 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 KIF24Q5T7B8 1368 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 NPC1L1Q9UHC9 1359 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 SPATA31A1Q5TZJ5 1347 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 WDR17Q8IZU2 1322 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 ONECUT3O60422 494 aaPredicted RBP11.98□□□□□ -0.49
SMAD4-217ENST00000611848 RRS1Q15050 365 aaKnown RBP11.98□□□□□ -0.49
SMAD4-217ENST00000611848 MORC1Q86VD1 984 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 CRB1P82279 1406 aa11.98□□□□□ -0.49
SMAD4-217ENST00000611848 CSB-PGBD3P0DP91 1061 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 HOXC9P31274 260 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 TOM1L2Q6ZVM7 507 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 THRAP3Q9Y2W1 955 aaKnown RBP11.97□□□□□ -0.49
SMAD4-217ENST00000611848 ERBB3P21860 1342 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 ANP32CO43423 234 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 TCP11L2Q8N4U5 519 aa11.97□□□□□ -0.49
SMAD4-217ENST00000611848 RGS12O14924 1447 aa11.96□□□□□ -0.49
SMAD4-217ENST00000611848 FLT4P35916 1363 aa11.96□□□□□ -0.49
SMAD4-217ENST00000611848 BARGINQ6ZT62 677 aa11.96□□□□□ -0.5
SMAD4-217ENST00000611848 ANKRD24Q8TF21 1146 aa11.96□□□□□ -0.5
SMAD4-217ENST00000611848 USP35Q9P2H5 1018 aa11.96□□□□□ -0.5
SMAD4-217ENST00000611848 TNNT2P45379 298 aaPredicted RBP11.95□□□□□ -0.5
SMAD4-217ENST00000611848 FAM98CQ17RN3 349 aaKnown RBP11.95□□□□□ -0.5
SMAD4-217ENST00000611848 CARD10Q9BWT7 1032 aa11.95□□□□□ -0.5
SMAD4-217ENST00000611848 POLKQ9UBT6 870 aa11.95□□□□□ -0.5
SMAD4-217ENST00000611848 EMILIN1Q9Y6C2 1016 aa11.95□□□□□ -0.5
SMAD4-217ENST00000611848 CC2D1BQ5T0F9 858 aaKnown RBP11.94□□□□□ -0.5
SMAD4-217ENST00000611848 SEPT12Q8IYM1 358 aa11.94□□□□□ -0.5
SMAD4-217ENST00000611848 INSRP06213 1382 aa11.94□□□□□ -0.5
SMAD4-217ENST00000611848 FAM208AQ9UK61 1670 aaKnown RBP11.94□□□□□ -0.5
SMAD4-217ENST00000611848 HSP90AB2PQ58FF8 381 aa11.93□□□□□ -0.5
SMAD4-217ENST00000611848 PEAK1Q9H792 1746 aa11.93□□□□□ -0.5
SMAD4-217ENST00000611848 A0A0G2JS52 829 aa11.93□□□□□ -0.5
SMAD4-217ENST00000611848 PPM1GO15355 546 aaPredicted RBP11.93□□□□□ -0.5
SMAD4-217ENST00000611848 MYT1Q01538 1121 aa11.93□□□□□ -0.5
SMAD4-217ENST00000611848 LTV1Q96GA3 475 aaPredicted RBP11.93□□□□□ -0.5
SMAD4-217ENST00000611848 NLRP2Q9NX02 1062 aa11.93□□□□□ -0.5
SMAD4-217ENST00000611848 THSD7AQ9UPZ6 1657 aa11.92□□□□□ -0.5
SMAD4-217ENST00000611848 SMG6Q86US8 1419 aaKnown RBP11.92□□□□□ -0.5
SMAD4-217ENST00000611848 CDCA7Q9BWT1 371 aaPredicted RBP11.92□□□□□ -0.5
SMAD4-217ENST00000611848 BRWD3Q6RI45 1802 aa11.92□□□□□ -0.5
SMAD4-217ENST00000611848 SOCS7O14512 581 aa11.9□□□□□ -0.5
SMAD4-217ENST00000611848 WNK3Q9BYP7 1800 aa11.9□□□□□ -0.51
SMAD4-217ENST00000611848 KRT27Q7Z3Y8 459 aa11.89□□□□□ -0.51
SMAD4-217ENST00000611848 PARP4Q9UKK3 1724 aaKnown RBP11.89□□□□□ -0.51
SMAD4-217ENST00000611848 RGPD2P0DJD1 1756 aa11.89□□□□□ -0.51
SMAD4-217ENST00000611848 CNGB1Q14028 1251 aaPredicted RBP11.89□□□□□ -0.51
SMAD4-217ENST00000611848 IL2RBP14784 551 aa11.88□□□□□ -0.51
SMAD4-217ENST00000611848 MTHFSP49914 203 aa11.88□□□□□ -0.51
SMAD4-217ENST00000611848 NBPF6Q5VWK0 638 aa11.88□□□□□ -0.51
SMAD4-217ENST00000611848 NBPF4Q96M43 638 aa11.88□□□□□ -0.51
SMAD4-217ENST00000611848 DISP2A7MBM2 1401 aa11.88□□□□□ -0.51
SMAD4-217ENST00000611848 PDE3BQ13370 1112 aa11.87□□□□□ -0.51
SMAD4-217ENST00000611848 EIF4A2Q14240 407 aaKnown RBP11.87□□□□□ -0.51
SMAD4-217ENST00000611848 DDB1Q16531 1140 aa11.87□□□□□ -0.51
SMAD4-217ENST00000611848 EXOC5O00471 708 aa11.86□□□□□ -0.51
SMAD4-217ENST00000611848 LRRC37A3O60309 1634 aa11.85□□□□□ -0.51
SMAD4-217ENST00000611848 EYA1Q99502 592 aa11.85□□□□□ -0.51
SMAD4-217ENST00000611848 PARD3Q8TEW0 1356 aa11.84□□□□□ -0.51
SMAD4-217ENST00000611848 NCAPD2Q15021 1401 aa11.84□□□□□ -0.51
SMAD4-217ENST00000611848 PPP2R1AP30153 589 aa11.84□□□□□ -0.51
SMAD4-217ENST00000611848 RALBP1Q15311 655 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms