RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ATF5Q9Y2D1 282 aaPredicted RBP12.39□□□□□ -0.43
TRIM28-214ENST00000600840 ROCK2O75116 1388 aaKnown RBP12.39□□□□□ -0.43
TRIM28-214ENST00000600840 USP6P35125 1406 aa12.38□□□□□ -0.43
TRIM28-214ENST00000600840 LRRC37A3O60309 1634 aa12.38□□□□□ -0.43
TRIM28-214ENST00000600840 GCP02774 474 aa12.38□□□□□ -0.43
TRIM28-214ENST00000600840 TCP11L2Q8N4U5 519 aa12.38□□□□□ -0.43
TRIM28-214ENST00000600840 PIK3C2AO00443 1686 aa12.38□□□□□ -0.43
TRIM28-214ENST00000600840 FHDC1Q9C0D6 1143 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-214ENST00000600840 AKAP12Q02952 1782 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 CPDO75976 1380 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 NLRP13Q86W25 1043 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 SYT17Q9BSW7 474 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 CARD11Q9BXL7 1154 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 EVC2Q86UK5 1308 aa12.36□□□□□ -0.43
TRIM28-214ENST00000600840 COL18A1P39060 1754 aa12.35□□□□□ -0.43
TRIM28-214ENST00000600840 NLRP6P59044 892 aa12.35□□□□□ -0.43
TRIM28-214ENST00000600840 OVOS2A0A0G2JMS6 1433 aa12.35□□□□□ -0.43
TRIM28-214ENST00000600840 OVOS2A0A0J9YW53 1432 aa12.35□□□□□ -0.43
TRIM28-214ENST00000600840 OVOS2Q6IE36 1432 aa12.35□□□□□ -0.43
TRIM28-214ENST00000600840 RGPD5Q99666 1765 aa12.34□□□□□ -0.43
TRIM28-214ENST00000600840 SLIT3O75094 1523 aa12.34□□□□□ -0.43
TRIM28-214ENST00000600840 ZBTB7CA1YPR0 619 aa12.34□□□□□ -0.43
TRIM28-214ENST00000600840 PROM2Q8N271 834 aa12.34□□□□□ -0.43
TRIM28-214ENST00000600840 BCL11BQ9C0K0 894 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-214ENST00000600840 WNK3Q9BYP7 1800 aa12.34□□□□□ -0.43
TRIM28-214ENST00000600840 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-214ENST00000600840 PLSCR1O15162 318 aa12.33□□□□□ -0.44
TRIM28-214ENST00000600840 TESK2Q96S53 571 aa12.33□□□□□ -0.44
TRIM28-214ENST00000600840 AXIN2Q9Y2T1 843 aa12.33□□□□□ -0.44
TRIM28-214ENST00000600840 TTC21BQ7Z4L5 1316 aa12.33□□□□□ -0.44
TRIM28-214ENST00000600840 BRD4O60885 1362 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-214ENST00000600840 CPSF1Q10570 1443 aaKnown RBP12.32□□□□□ -0.44
TRIM28-214ENST00000600840 ST20-MTHFSA0A0A6YYL1 179 aa12.31□□□□□ -0.44
TRIM28-214ENST00000600840 SGIP1Q9BQI5 828 aa12.31□□□□□ -0.44
TRIM28-214ENST00000600840 THRAP3Q9Y2W1 955 aaKnown RBP12.31□□□□□ -0.44
TRIM28-214ENST00000600840 CRB1P82279 1406 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 CD163L1Q9NR16 1453 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 SOX12O15370 315 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 GIGYF1O75420 1035 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-214ENST00000600840 HSPA5P11021 654 aaKnown RBP12.3□□□□□ -0.44
TRIM28-214ENST00000600840 MON2Q7Z3U7 1717 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 SHANK3Q9BYB0 1731 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 AATKQ6ZMQ8 1374 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 USP47Q96K76 1375 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 SBNO2Q9Y2G9 1366 aa12.3□□□□□ -0.44
TRIM28-214ENST00000600840 ARHGEF25Q86VW2 580 aa12.29□□□□□ -0.44
TRIM28-214ENST00000600840 ZNF692Q9BU19 519 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-214ENST00000600840 EIF4G2P78344 907 aaKnown RBP eCLIP12.28□□□□□ -0.44
TRIM28-214ENST00000600840 SLC15A2Q16348 729 aa12.28□□□□□ -0.44
TRIM28-214ENST00000600840 DDB1Q16531 1140 aa12.28□□□□□ -0.44
TRIM28-214ENST00000600840 TXNRD1Q16881 649 aa12.28□□□□□ -0.44
TRIM28-214ENST00000600840 SLC12A5Q9H2X9 1139 aa12.28□□□□□ -0.44
TRIM28-214ENST00000600840 STK32BQ9NY57 414 aa12.28□□□□□ -0.44
TRIM28-214ENST00000600840 KTN1Q86UP2 1357 aaKnown RBP12.28□□□□□ -0.44
TRIM28-214ENST00000600840 NFAT5O94916 1531 aa12.27□□□□□ -0.44
TRIM28-214ENST00000600840 NME9Q86XW9 330 aa12.27□□□□□ -0.45
TRIM28-214ENST00000600840 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.27□□□□□ -0.45
TRIM28-214ENST00000600840 MARCH10Q8NA82 808 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-214ENST00000600840 MTFR1LQ9H019 292 aa12.27□□□□□ -0.45
TRIM28-214ENST00000600840 C11orf95C9JLR9 678 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-214ENST00000600840 ARXQ96QS3 562 aa12.26□□□□□ -0.45
TRIM28-214ENST00000600840 TTC21AQ8NDW8 1320 aa12.26□□□□□ -0.45
TRIM28-214ENST00000600840 PAPPAQ13219 1627 aa12.26□□□□□ -0.45
TRIM28-214ENST00000600840 GPR162Q16538 588 aa12.25□□□□□ -0.45
TRIM28-214ENST00000600840 TOM1L2Q6ZVM7 507 aa12.25□□□□□ -0.45
TRIM28-214ENST00000600840 TMC1Q8TDI8 760 aa12.25□□□□□ -0.45
TRIM28-214ENST00000600840 USP54Q70EL1 1684 aa12.24□□□□□ -0.45
TRIM28-214ENST00000600840 PELP1Q8IZL8 1130 aaKnown RBP12.24□□□□□ -0.45
TRIM28-214ENST00000600840 WDR17Q8IZU2 1322 aa12.24□□□□□ -0.45
TRIM28-214ENST00000600840 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
TRIM28-214ENST00000600840 USP31Q70CQ4 1352 aa12.23□□□□□ -0.45
TRIM28-214ENST00000600840 MAP3K5Q99683 1374 aa12.23□□□□□ -0.45
TRIM28-214ENST00000600840 KCNH5Q8NCM2 988 aa12.23□□□□□ -0.45
TRIM28-214ENST00000600840 PUS7Q96PZ0 661 aaKnown RBP12.23□□□□□ -0.45
TRIM28-214ENST00000600840 LTN1O94822 1766 aa12.23□□□□□ -0.45
TRIM28-214ENST00000600840 NHSQ6T4R5 1651 aa12.22□□□□□ -0.45
TRIM28-214ENST00000600840 A0A1W2PP64 1363 aa12.22□□□□□ -0.45
TRIM28-214ENST00000600840 UTRNP46939 3433 aa12.22□□□□□ -0.45
TRIM28-214ENST00000600840 BCL9O00512 1426 aa12.21□□□□□ -0.45
TRIM28-214ENST00000600840 FBLN1P23142 703 aa12.21□□□□□ -0.45
TRIM28-214ENST00000600840 CARD10Q9BWT7 1032 aa12.21□□□□□ -0.45
TRIM28-214ENST00000600840 BTAF1O14981 1849 aa12.21□□□□□ -0.46
TRIM28-214ENST00000600840 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
TRIM28-214ENST00000600840 CSB-PGBD3P0DP91 1061 aa12.2□□□□□ -0.46
TRIM28-214ENST00000600840 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
TRIM28-214ENST00000600840 TUBGCP6Q96RT7 1819 aa12.2□□□□□ -0.46
TRIM28-214ENST00000600840 EDC4Q6P2E9 1401 aaKnown RBP12.2□□□□□ -0.46
TRIM28-214ENST00000600840 HDGFL2Q7Z4V5 671 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-214ENST00000600840 NLGN2Q8NFZ4 835 aa12.19□□□□□ -0.46
TRIM28-214ENST00000600840 ACSBG1Q96GR2 724 aa12.19□□□□□ -0.46
TRIM28-214ENST00000600840 COL24A1Q17RW2 1714 aa12.19□□□□□ -0.46
TRIM28-214ENST00000600840 TMF1P82094 1093 aa12.17□□□□□ -0.46
TRIM28-214ENST00000600840 ABCC6O95255 1503 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 ERBB3P21860 1342 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 YBX3P16989 372 aaKnown RBP eCLIP12.16□□□□□ -0.46
TRIM28-214ENST00000600840 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 LRRC4BQ9NT99 713 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 TERF2IPQ9NYB0 399 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 TNS2Q63HR2 1409 aa12.16□□□□□ -0.46
TRIM28-214ENST00000600840 ATP10DQ9P241 1426 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms