RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 WNK3Q9BYP7 1800 aa20.4■□□□□ 0.86
SHKBP1-218ENST00000598907 NUDT16Q96DE0 195 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-218ENST00000598907 ABTB2Q8N961 1025 aa20.38■□□□□ 0.85
SHKBP1-218ENST00000598907 MPHOSPH9Q99550 1183 aa20.38■□□□□ 0.85
SHKBP1-218ENST00000598907 TOPAZ1Q8N9V7 1692 aa20.38■□□□□ 0.85
SHKBP1-218ENST00000598907 USP19O94966 1318 aa20.36■□□□□ 0.85
SHKBP1-218ENST00000598907 MAP3K5Q99683 1374 aa20.35■□□□□ 0.85
SHKBP1-218ENST00000598907 ACEP12821 1306 aa20.35■□□□□ 0.85
SHKBP1-218ENST00000598907 MARCH10Q8NA82 808 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-218ENST00000598907 ARHGEF28Q8N1W1 1705 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-218ENST00000598907 TOM1L2Q6ZVM7 507 aa20.34■□□□□ 0.85
SHKBP1-218ENST00000598907 POLR3AO14802 1390 aaPredicted RBP20.33■□□□□ 0.84
SHKBP1-218ENST00000598907 GCP02774 474 aa20.32■□□□□ 0.84
SHKBP1-218ENST00000598907 PAPPAQ13219 1627 aa20.31■□□□□ 0.84
SHKBP1-218ENST00000598907 NLRP13Q86W25 1043 aa20.29■□□□□ 0.84
SHKBP1-218ENST00000598907 CDK19Q9BWU1 502 aa20.28■□□□□ 0.84
SHKBP1-218ENST00000598907 BCL9O00512 1426 aa20.27■□□□□ 0.84
SHKBP1-218ENST00000598907 NHSQ6T4R5 1651 aa20.27■□□□□ 0.84
SHKBP1-218ENST00000598907 AATKQ6ZMQ8 1374 aa20.27■□□□□ 0.84
SHKBP1-218ENST00000598907 ZNF827Q17R98 1081 aa20.25■□□□□ 0.83
SHKBP1-218ENST00000598907 KDM2AQ9Y2K7 1162 aa20.25■□□□□ 0.83
SHKBP1-218ENST00000598907 ATP10DQ9P241 1426 aa20.25■□□□□ 0.83
SHKBP1-218ENST00000598907 GOLGB1Q14789 3259 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-218ENST00000598907 RAB3GAP2Q9H2M9 1393 aa20.24■□□□□ 0.83
SHKBP1-218ENST00000598907 NLGN2Q8NFZ4 835 aa20.24■□□□□ 0.83
SHKBP1-218ENST00000598907 CCDC61Q9Y6R9 512 aa20.24■□□□□ 0.83
SHKBP1-218ENST00000598907 WDR17Q8IZU2 1322 aa20.24■□□□□ 0.83
SHKBP1-218ENST00000598907 ACSBG1Q96GR2 724 aa20.23■□□□□ 0.83
SHKBP1-218ENST00000598907 SLIT3O75094 1523 aa20.22■□□□□ 0.83
SHKBP1-218ENST00000598907 COL18A1P39060 1754 aa20.22■□□□□ 0.83
SHKBP1-218ENST00000598907 CDCA7Q9BWT1 371 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-218ENST00000598907 PLEKHG3A1L390 1219 aa20.21■□□□□ 0.83
SHKBP1-218ENST00000598907 POLD1P28340 1107 aa20.21■□□□□ 0.83
SHKBP1-218ENST00000598907 TNS2Q63HR2 1409 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 PPIP5K1Q6PFW1 1433 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 CSB-PGBD3P0DP91 1061 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 HSPA6P17066 643 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 RGPD5Q99666 1765 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 BTAF1O14981 1849 aa20.2■□□□□ 0.82
SHKBP1-218ENST00000598907 YBX3P16989 372 aaKnown RBP eCLIP20.19■□□□□ 0.82
SHKBP1-218ENST00000598907 NLRP6P59044 892 aa20.19■□□□□ 0.82
SHKBP1-218ENST00000598907 ZNF526Q8TF50 670 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-218ENST00000598907 AXIN2Q9Y2T1 843 aa20.19■□□□□ 0.82
SHKBP1-218ENST00000598907 EXOC5O00471 708 aa20.18■□□□□ 0.82
SHKBP1-218ENST00000598907 GPBP1L1Q9HC44 474 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-218ENST00000598907 BRD4O60885 1362 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-218ENST00000598907 CPSF1Q10570 1443 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-218ENST00000598907 DCAF11Q8TEB1 546 aa20.17■□□□□ 0.82
SHKBP1-218ENST00000598907 PIK3C2AO00443 1686 aa20.16■□□□□ 0.82
SHKBP1-218ENST00000598907 SOX12O15370 315 aa20.16■□□□□ 0.82
SHKBP1-218ENST00000598907 TUBGCP6Q96RT7 1819 aa20.15■□□□□ 0.82
SHKBP1-218ENST00000598907 COL24A1Q17RW2 1714 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 QSER1Q2KHR3 1735 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 ABCC6O95255 1503 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 USP6P35125 1406 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 GRIN3BO60391 1043 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 SRPK2P78362 688 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 CARD10Q9BWT7 1032 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 LRRC4BQ9NT99 713 aa20.14■□□□□ 0.81
SHKBP1-218ENST00000598907 TRPM1Q7Z4N2 1603 aa20.13■□□□□ 0.81
SHKBP1-218ENST00000598907 PNPLA7Q6ZV29 1317 aa20.12■□□□□ 0.81
SHKBP1-218ENST00000598907 QRICH2Q9H0J4 1663 aa20.11■□□□□ 0.81
SHKBP1-218ENST00000598907 SLC16A10Q8TF71 515 aa20.11■□□□□ 0.81
SHKBP1-218ENST00000598907 CCDC7Q96M83 1385 aa20.1■□□□□ 0.81
SHKBP1-218ENST00000598907 AKT1S1Q96B36 256 aa20.1■□□□□ 0.81
SHKBP1-218ENST00000598907 CABP2Q9NPB3 220 aa20.1■□□□□ 0.81
SHKBP1-218ENST00000598907 CAPN15O75808 1086 aa20.08■□□□□ 0.81
SHKBP1-218ENST00000598907 TFCP2L1Q9NZI6 479 aa20.08■□□□□ 0.81
SHKBP1-218ENST00000598907 KCNQ4P56696 695 aa20.07■□□□□ 0.8
SHKBP1-218ENST00000598907 ADCY9O60503 1353 aa20.07■□□□□ 0.8
SHKBP1-218ENST00000598907 ARHGEF25Q86VW2 580 aa20.06■□□□□ 0.8
SHKBP1-218ENST00000598907 KAT6BQ8WYB5 2073 aa20.05■□□□□ 0.8
SHKBP1-218ENST00000598907 MSH5O43196 834 aa20.04■□□□□ 0.8
SHKBP1-218ENST00000598907 CABP1Q9NZU7 370 aa20.04■□□□□ 0.8
SHKBP1-218ENST00000598907 MSL1Q68DK7 614 aa20.03■□□□□ 0.8
SHKBP1-218ENST00000598907 NFAT5O94916 1531 aa20.02■□□□□ 0.79
SHKBP1-218ENST00000598907 SLC27A3Q5K4L6 730 aa20.01■□□□□ 0.79
SHKBP1-218ENST00000598907 KCNH5Q8NCM2 988 aa20.01■□□□□ 0.79
SHKBP1-218ENST00000598907 NLRP2Q9NX02 1062 aa20.01■□□□□ 0.79
SHKBP1-218ENST00000598907 WWC3Q9ULE0 1092 aa20.01■□□□□ 0.79
SHKBP1-218ENST00000598907 IL2RBP14784 551 aa19.99■□□□□ 0.79
SHKBP1-218ENST00000598907 APLP1P51693 650 aa19.97■□□□□ 0.79
SHKBP1-218ENST00000598907 SYTL4Q96C24 671 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-218ENST00000598907 CENPJQ9HC77 1338 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-218ENST00000598907 DOT1LQ8TEK3 1739 aa19.96■□□□□ 0.79
SHKBP1-218ENST00000598907 KIF3CO14782 793 aa19.96■□□□□ 0.79
SHKBP1-218ENST00000598907 KIAA1210Q9ULL0 1709 aa19.96■□□□□ 0.79
SHKBP1-218ENST00000598907 STAC3Q96MF2 364 aa19.95■□□□□ 0.78
SHKBP1-218ENST00000598907 ERBB3P21860 1342 aa19.95■□□□□ 0.78
SHKBP1-218ENST00000598907 TTC21BQ7Z4L5 1316 aa19.95■□□□□ 0.78
SHKBP1-218ENST00000598907 LY75O60449 1722 aa19.94■□□□□ 0.78
SHKBP1-218ENST00000598907 COL13A1Q5TAT6 717 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-218ENST00000598907 NBPF1Q3BBV0 1214 aa19.93■□□□□ 0.78
SHKBP1-218ENST00000598907 COL23A1Q86Y22 540 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-218ENST00000598907 DDX54Q8TDD1 881 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-218ENST00000598907 LTN1O94822 1766 aa19.92■□□□□ 0.78
SHKBP1-218ENST00000598907 DNAJC5GQ8N7S2 189 aa19.91■□□□□ 0.78
SHKBP1-218ENST00000598907 CCNL1Q9UK58 526 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-218ENST00000598907 WDR90Q96KV7 1748 aa19.9■□□□□ 0.78
SHKBP1-218ENST00000598907 CD2APQ9Y5K6 639 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms