RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GLI3P10071 1580 aa19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 NWD2Q9ULI1 1742 aa19.56■□□□□ 0.72
SHKBP1-217ENST00000598558 SPATA31A5Q5VU36 1347 aa19.55■□□□□ 0.72
SHKBP1-217ENST00000598558 SPATA31A7Q8IWB4 1347 aa19.55■□□□□ 0.72
SHKBP1-217ENST00000598558 EVA1CP58658 441 aa19.55■□□□□ 0.72
SHKBP1-217ENST00000598558 COL5A2P05997 1499 aaPredicted RBP19.54■□□□□ 0.72
SHKBP1-217ENST00000598558 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.54■□□□□ 0.72
SHKBP1-217ENST00000598558 RGS12O14924 1447 aa19.54■□□□□ 0.72
SHKBP1-217ENST00000598558 KNSTRNQ9Y448 316 aa19.54■□□□□ 0.72
SHKBP1-217ENST00000598558 ONECUT3O60422 494 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-217ENST00000598558 SPATA31A1Q5TZJ5 1347 aa19.52■□□□□ 0.72
SHKBP1-217ENST00000598558 IP6K1Q92551 441 aa19.52■□□□□ 0.72
SHKBP1-217ENST00000598558 TNNT2P45379 298 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-217ENST00000598558 FAM98CQ17RN3 349 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-217ENST00000598558 USP35Q9P2H5 1018 aa19.51■□□□□ 0.71
SHKBP1-217ENST00000598558 EMILIN1Q9Y6C2 1016 aa19.51■□□□□ 0.71
SHKBP1-217ENST00000598558 CDK12Q9NYV4 1490 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-217ENST00000598558 HOXC9P31274 260 aa19.5■□□□□ 0.71
SHKBP1-217ENST00000598558 SEPT12Q8IYM1 358 aa19.49■□□□□ 0.71
SHKBP1-217ENST00000598558 POLKQ9UBT6 870 aa19.49■□□□□ 0.71
SHKBP1-217ENST00000598558 WDR17Q8IZU2 1322 aa19.49■□□□□ 0.71
SHKBP1-217ENST00000598558 KIF20BQ96Q89 1820 aa19.48■□□□□ 0.71
SHKBP1-217ENST00000598558 AMPHP49418 695 aa19.48■□□□□ 0.71
SHKBP1-217ENST00000598558 ANKRD24Q8TF21 1146 aa19.48■□□□□ 0.71
SHKBP1-217ENST00000598558 HSP90AB2PQ58FF8 381 aa19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 CC2D1BQ5T0F9 858 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 TOM1L2Q6ZVM7 507 aa19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 MORC1Q86VD1 984 aa19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 LTV1Q96GA3 475 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 ERBB3P21860 1342 aa19.47■□□□□ 0.71
SHKBP1-217ENST00000598558 CRB1P82279 1406 aa19.46■□□□□ 0.71
SHKBP1-217ENST00000598558 CNGB1Q14028 1251 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-217ENST00000598558 NSD2O96028 1365 aa19.45■□□□□ 0.7
SHKBP1-217ENST00000598558 CSB-PGBD3P0DP91 1061 aa19.45■□□□□ 0.7
SHKBP1-217ENST00000598558 TCP11L2Q8N4U5 519 aa19.45■□□□□ 0.7
SHKBP1-217ENST00000598558 SOCS7O14512 581 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 BARGINQ6ZT62 677 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 CARD10Q9BWT7 1032 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 PEAK1Q9H792 1746 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 ABCC6O95255 1503 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 RGPD5Q99666 1765 aa19.44■□□□□ 0.7
SHKBP1-217ENST00000598558 LTN1O94822 1766 aa19.43■□□□□ 0.7
SHKBP1-217ENST00000598558 BLMP54132 1417 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-217ENST00000598558 PPM1GO15355 546 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-217ENST00000598558 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-217ENST00000598558 NLRP2Q9NX02 1062 aa19.42■□□□□ 0.7
SHKBP1-217ENST00000598558 RTL1A6NKG5 1358 aa19.42■□□□□ 0.7
SHKBP1-217ENST00000598558 THRAP3Q9Y2W1 955 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-217ENST00000598558 INSRP06213 1382 aa19.41■□□□□ 0.7
SHKBP1-217ENST00000598558 NPC1L1Q9UHC9 1359 aa19.41■□□□□ 0.7
SHKBP1-217ENST00000598558 NBPF6Q5VWK0 638 aa19.4■□□□□ 0.7
SHKBP1-217ENST00000598558 NBPF4Q96M43 638 aa19.4■□□□□ 0.7
SHKBP1-217ENST00000598558 FLT4P35916 1363 aa19.4■□□□□ 0.7
SHKBP1-217ENST00000598558 A0A0G2JS52 829 aa19.39■□□□□ 0.69
SHKBP1-217ENST00000598558 MYT1Q01538 1121 aa19.39■□□□□ 0.69
SHKBP1-217ENST00000598558 FAM182BQ5T319 152 aa19.39■□□□□ 0.69
SHKBP1-217ENST00000598558 KIF24Q5T7B8 1368 aa19.38■□□□□ 0.69
SHKBP1-217ENST00000598558 ANKRD26Q9UPS8 1709 aa19.38■□□□□ 0.69
SHKBP1-217ENST00000598558 THSD7AQ9UPZ6 1657 aa19.37■□□□□ 0.69
SHKBP1-217ENST00000598558 DISP2A7MBM2 1401 aa19.37■□□□□ 0.69
SHKBP1-217ENST00000598558 KRT27Q7Z3Y8 459 aa19.37■□□□□ 0.69
SHKBP1-217ENST00000598558 USHBP1Q8N6Y0 703 aa19.37■□□□□ 0.69
SHKBP1-217ENST00000598558 SMG6Q86US8 1419 aaKnown RBP19.35■□□□□ 0.69
SHKBP1-217ENST00000598558 MTHFSP49914 203 aa19.35■□□□□ 0.69
SHKBP1-217ENST00000598558 EIF4A2Q14240 407 aaKnown RBP19.35■□□□□ 0.69
SHKBP1-217ENST00000598558 UPF1Q92900 1129 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHKBP1-217ENST00000598558 ZNF316A6NFI3 1004 aaPredicted RBP19.34■□□□□ 0.69
SHKBP1-217ENST00000598558 EYA1Q99502 592 aa19.33■□□□□ 0.68
SHKBP1-217ENST00000598558 BRWD3Q6RI45 1802 aa19.32■□□□□ 0.68
SHKBP1-217ENST00000598558 MAP2P11137 1827 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-217ENST00000598558 IL2RBP14784 551 aa19.3■□□□□ 0.68
SHKBP1-217ENST00000598558 DDB1Q16531 1140 aa19.3■□□□□ 0.68
SHKBP1-217ENST00000598558 MARCH10Q8NA82 808 aaPredicted RBP19.3■□□□□ 0.68
SHKBP1-217ENST00000598558 PDE3BQ13370 1112 aa19.29■□□□□ 0.68
SHKBP1-217ENST00000598558 CDCA7Q9BWT1 371 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-217ENST00000598558 FAM208AQ9UK61 1670 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-217ENST00000598558 EXOC5O00471 708 aa19.28■□□□□ 0.68
SHKBP1-217ENST00000598558 PPP2R1AP30153 589 aa19.28■□□□□ 0.68
SHKBP1-217ENST00000598558 IL13P35225 146 aa19.28■□□□□ 0.68
SHKBP1-217ENST00000598558 RGPD2P0DJD1 1756 aa19.27■□□□□ 0.68
SHKBP1-217ENST00000598558 MEGF6O75095 1541 aa19.27■□□□□ 0.68
SHKBP1-217ENST00000598558 NCAPD2Q15021 1401 aa19.26■□□□□ 0.67
SHKBP1-217ENST00000598558 PARP4Q9UKK3 1724 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-217ENST00000598558 PARD3Q8TEW0 1356 aa19.25■□□□□ 0.67
SHKBP1-217ENST00000598558 LRRC37A3O60309 1634 aa19.25■□□□□ 0.67
SHKBP1-217ENST00000598558 IGSF1Q8N6C5 1336 aa19.25■□□□□ 0.67
SHKBP1-217ENST00000598558 AEBP1Q8IUX7 1158 aa19.24■□□□□ 0.67
SHKBP1-217ENST00000598558 PTF1AQ7RTS3 328 aa19.23■□□□□ 0.67
SHKBP1-217ENST00000598558 FAM196AQ6ZSG2 479 aa19.22■□□□□ 0.67
SHKBP1-217ENST00000598558 TNS2Q63HR2 1409 aa19.22■□□□□ 0.67
SHKBP1-217ENST00000598558 COL3A1P02461 1466 aaPredicted RBP19.22■□□□□ 0.67
SHKBP1-217ENST00000598558 WNK3Q9BYP7 1800 aa19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 OVOS2A0A0G2JMS6 1433 aa19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 TATP17735 454 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 ZCRB1Q8TBF4 217 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 DDX54Q8TDD1 881 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 RAPGEF4Q8WZA2 1011 aa19.21■□□□□ 0.67
SHKBP1-217ENST00000598558 DIAPH1O60610 1272 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-217ENST00000598558 TRIM37O94972 964 aa19.2■□□□□ 0.66
SHKBP1-217ENST00000598558 SULT6B1Q6IMI4 303 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms