RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 COL3A1P02461 1466 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-209ENST00000597423 NFAT5O94916 1531 aa20.17■□□□□ 0.82
TRIM28-209ENST00000597423 CPDO75976 1380 aa20.16■□□□□ 0.82
TRIM28-209ENST00000597423 MAPK8IP3Q9UPT6 1336 aa20.15■□□□□ 0.82
TRIM28-209ENST00000597423 MED1Q15648 1581 aaPredicted RBP20.14■□□□□ 0.81
TRIM28-209ENST00000597423 BLMP54132 1417 aaPredicted RBP20.14■□□□□ 0.81
TRIM28-209ENST00000597423 PRDM11Q9NQV5 511 aa20.14■□□□□ 0.81
TRIM28-209ENST00000597423 ZBED9Q6R2W3 1325 aa20.13■□□□□ 0.81
TRIM28-209ENST00000597423 CCDC146Q8IYE0 955 aa20.13■□□□□ 0.81
TRIM28-209ENST00000597423 LTV1Q96GA3 475 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-209ENST00000597423 MARF1Q9Y4F3 1742 aaKnown RBP20.13■□□□□ 0.81
TRIM28-209ENST00000597423 NCBP3Q53F19 620 aaKnown RBP20.12■□□□□ 0.81
TRIM28-209ENST00000597423 SULT6B1Q6IMI4 303 aa20.11■□□□□ 0.81
TRIM28-209ENST00000597423 KIAA0232Q92628 1395 aa20.1■□□□□ 0.81
TRIM28-209ENST00000597423 APAF1O14727 1248 aa20.1■□□□□ 0.81
TRIM28-209ENST00000597423 HMOX1P09601 288 aa20.1■□□□□ 0.81
TRIM28-209ENST00000597423 ANKRD24Q8TF21 1146 aa20.1■□□□□ 0.81
TRIM28-209ENST00000597423 RSPH6AQ9H0K4 717 aa20.1■□□□□ 0.81
TRIM28-209ENST00000597423 PRKAR2BP31323 418 aa20.09■□□□□ 0.81
TRIM28-209ENST00000597423 EYA1Q99502 592 aa20.09■□□□□ 0.81
TRIM28-209ENST00000597423 PHLPP1O60346 1717 aa20.09■□□□□ 0.81
TRIM28-209ENST00000597423 TCP11L2Q8N4U5 519 aa20.08■□□□□ 0.81
TRIM28-209ENST00000597423 PLEKHF1Q96S99 279 aa20.08■□□□□ 0.81
TRIM28-209ENST00000597423 PEAK1Q9H792 1746 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 IGSF1Q8N6C5 1336 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 SHPRHQ149N8 1683 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 CSB-PGBD3P0DP91 1061 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 PDE3BQ13370 1112 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 CHRNA2Q15822 529 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 AXIN2Q9Y2T1 843 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 JCADQ9P266 1359 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 ABCC6O95255 1503 aa20.07■□□□□ 0.8
TRIM28-209ENST00000597423 PHRF1Q9P1Y6 1649 aaKnown RBP20.06■□□□□ 0.8
TRIM28-209ENST00000597423 EVA1CP58658 441 aa20.06■□□□□ 0.8
TRIM28-209ENST00000597423 SALL2Q9Y467 1007 aaPredicted RBP20.06■□□□□ 0.8
TRIM28-209ENST00000597423 FAM83GA6ND36 823 aa20.04■□□□□ 0.8
TRIM28-209ENST00000597423 COL16A1Q07092 1604 aaPredicted RBP20.04■□□□□ 0.8
TRIM28-209ENST00000597423 ERBB3P21860 1342 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 LTN1O94822 1766 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 TMPOP42166 694 aaKnown RBP20.03■□□□□ 0.8
TRIM28-209ENST00000597423 CCDC27Q2M243 656 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 NBPF6Q5VWK0 638 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 NBPF4Q96M43 638 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 NLRP2Q9NX02 1062 aa20.03■□□□□ 0.8
TRIM28-209ENST00000597423 LMOD3Q0VAK6 560 aa20.02■□□□□ 0.8
TRIM28-209ENST00000597423 NEUROD2Q15784 382 aa20.02■□□□□ 0.8
TRIM28-209ENST00000597423 COL22A1Q8NFW1 1626 aaPredicted RBP20.02■□□□□ 0.79
TRIM28-209ENST00000597423 SPATA31A6Q5VVP1 1343 aa20.02■□□□□ 0.79
TRIM28-209ENST00000597423 KDRP35968 1356 aa20.01■□□□□ 0.79
TRIM28-209ENST00000597423 NUTM2BA6NNL0 878 aaPredicted RBP20.01■□□□□ 0.79
TRIM28-209ENST00000597423 NUTM2EB1AL46 878 aaPredicted RBP20.01■□□□□ 0.79
TRIM28-209ENST00000597423 RIPK4P57078 832 aa20.01■□□□□ 0.79
TRIM28-209ENST00000597423 NFE2L2Q16236 605 aa20.01■□□□□ 0.79
TRIM28-209ENST00000597423 AEBP1Q8IUX7 1158 aa20.01■□□□□ 0.79
TRIM28-209ENST00000597423 NUTM2AQ8IVF1 878 aaPredicted RBP20.01■□□□□ 0.79
TRIM28-209ENST00000597423 HSPA1LP34931 641 aa20■□□□□ 0.79
TRIM28-209ENST00000597423 GAS2L2Q8NHY3 880 aa20■□□□□ 0.79
TRIM28-209ENST00000597423 SENP3-EIF4A1A0A087X0R7 540 aa19.99■□□□□ 0.79
TRIM28-209ENST00000597423 ADAMTS2O95450 1211 aa19.99■□□□□ 0.79
TRIM28-209ENST00000597423 PHACTR3Q96KR7 559 aa19.99■□□□□ 0.79
TRIM28-209ENST00000597423 CRYBG1Q9Y4K1 1723 aa19.99■□□□□ 0.79
TRIM28-209ENST00000597423 CALD1Q05682 793 aaKnown RBP19.98■□□□□ 0.79
TRIM28-209ENST00000597423 GOLGA2Q08379 1002 aa19.98■□□□□ 0.79
TRIM28-209ENST00000597423 TOM1L2Q6ZVM7 507 aa19.98■□□□□ 0.79
TRIM28-209ENST00000597423 WDR63Q8IWG1 891 aa19.98■□□□□ 0.79
TRIM28-209ENST00000597423 BTG4Q9NY30 223 aa19.98■□□□□ 0.79
TRIM28-209ENST00000597423 RRP7AQ9Y3A4 280 aaKnown RBP19.98■□□□□ 0.79
TRIM28-209ENST00000597423 WDR17Q8IZU2 1322 aa19.98■□□□□ 0.79
TRIM28-209ENST00000597423 AMOTQ4VCS5 1084 aa19.97■□□□□ 0.79
TRIM28-209ENST00000597423 PLEKHO1Q53GL0 409 aaPredicted RBP19.97■□□□□ 0.79
TRIM28-209ENST00000597423 WWC1Q8IX03 1113 aa19.97■□□□□ 0.79
TRIM28-209ENST00000597423 RAPGEF4Q8WZA2 1011 aa19.97■□□□□ 0.79
TRIM28-209ENST00000597423 USHBP1Q8N6Y0 703 aa19.96■□□□□ 0.79
TRIM28-209ENST00000597423 STRN4Q9NRL3 753 aa19.96■□□□□ 0.79
TRIM28-209ENST00000597423 TATP17735 454 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-209ENST00000597423 PHF23Q9BUL5 403 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-209ENST00000597423 CARD10Q9BWT7 1032 aa19.95■□□□□ 0.78
TRIM28-209ENST00000597423 RGPD1P0DJD0 1748 aa19.94■□□□□ 0.78
TRIM28-209ENST00000597423 COL18A1P39060 1754 aa19.94■□□□□ 0.78
TRIM28-209ENST00000597423 E9PSI1 815 aa19.93■□□□□ 0.78
TRIM28-209ENST00000597423 HTATSF1O43719 755 aaKnown RBP19.93■□□□□ 0.78
TRIM28-209ENST00000597423 RTF1Q92541 710 aaKnown RBP19.93■□□□□ 0.78
TRIM28-209ENST00000597423 ZNF521Q96K83 1311 aa19.93■□□□□ 0.78
TRIM28-209ENST00000597423 CAMTA1Q9Y6Y1 1673 aa19.93■□□□□ 0.78
TRIM28-209ENST00000597423 MTHFSDQ2M296 383 aaKnown RBP19.92■□□□□ 0.78
TRIM28-209ENST00000597423 NGLY1Q96IV0 654 aa19.92■□□□□ 0.78
TRIM28-209ENST00000597423 SPG7Q9UQ90 795 aa19.92■□□□□ 0.78
TRIM28-209ENST00000597423 ABCA3Q99758 1704 aa19.92■□□□□ 0.78
TRIM28-209ENST00000597423 PLEKHG2Q9H7P9 1386 aa19.92■□□□□ 0.78
TRIM28-209ENST00000597423 COL5A2P05997 1499 aaPredicted RBP19.92■□□□□ 0.78
TRIM28-209ENST00000597423 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.91■□□□□ 0.78
TRIM28-209ENST00000597423 TRIM35Q9UPQ4 493 aa19.91■□□□□ 0.78
TRIM28-209ENST00000597423 NCAPD2Q15021 1401 aa19.91■□□□□ 0.78
TRIM28-209ENST00000597423 COL14A1Q05707 1796 aaKnown RBP19.9■□□□□ 0.78
TRIM28-209ENST00000597423 MEX3CQ5U5Q3 659 aaKnown RBP19.9■□□□□ 0.78
TRIM28-209ENST00000597423 LARP1Q6PKG0 1096 aaKnown RBP19.9■□□□□ 0.78
TRIM28-209ENST00000597423 MYH16Q9H6N6 1097 aa19.9■□□□□ 0.78
TRIM28-209ENST00000597423 IL16Q14005 1332 aa19.9■□□□□ 0.78
TRIM28-209ENST00000597423 GNAT3A8MTJ3 354 aa19.89■□□□□ 0.77
TRIM28-209ENST00000597423 LMO7Q8WWI1 1683 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms