RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 NSD2O96028 1365 aa35.37■■■■□ 3.25
TRIM28-204ENST00000594806 STRN4Q9NRL3 753 aa35.36■■■■□ 3.25
TRIM28-204ENST00000594806 COL5A2P05997 1499 aaPredicted RBP35.35■■■■□ 3.25
TRIM28-204ENST00000594806 GLI3P10071 1580 aa35.35■■■■□ 3.25
TRIM28-204ENST00000594806 SPATA31A5Q5VU36 1347 aa35.34■■■■□ 3.25
TRIM28-204ENST00000594806 SPATA31A7Q8IWB4 1347 aa35.34■■■■□ 3.25
TRIM28-204ENST00000594806 ANKRD26Q9UPS8 1709 aa35.33■■■■□ 3.25
TRIM28-204ENST00000594806 AXIN2Q9Y2T1 843 aa35.32■■■■□ 3.24
TRIM28-204ENST00000594806 ONECUT3O60422 494 aaPredicted RBP35.3■■■■□ 3.24
TRIM28-204ENST00000594806 RGPD5Q99666 1765 aa35.3■■■■□ 3.24
TRIM28-204ENST00000594806 SPATA31A1Q5TZJ5 1347 aa35.3■■■■□ 3.24
TRIM28-204ENST00000594806 IP6K1Q92551 441 aa35.29■■■■□ 3.24
TRIM28-204ENST00000594806 RGS12O14924 1447 aa35.29■■■■□ 3.24
TRIM28-204ENST00000594806 BLMP54132 1417 aaPredicted RBP35.28■■■■□ 3.24
TRIM28-204ENST00000594806 MAP3K19Q56UN5 1328 aa35.28■■■■□ 3.24
TRIM28-204ENST00000594806 PER1O15534 1290 aaPredicted RBP35.27■■■■□ 3.24
TRIM28-204ENST00000594806 LARP1Q6PKG0 1096 aaKnown RBP35.27■■■■□ 3.24
TRIM28-204ENST00000594806 WDR17Q8IZU2 1322 aa35.27■■■■□ 3.24
TRIM28-204ENST00000594806 KIF24Q5T7B8 1368 aa35.26■■■■□ 3.24
TRIM28-204ENST00000594806 CRB1P82279 1406 aa35.26■■■■□ 3.24
TRIM28-204ENST00000594806 RTL1A6NKG5 1358 aa35.25■■■■□ 3.23
TRIM28-204ENST00000594806 AMPHP49418 695 aa35.25■■■■□ 3.23
TRIM28-204ENST00000594806 THRAP3Q9Y2W1 955 aaKnown RBP35.25■■■■□ 3.23
TRIM28-204ENST00000594806 AMER1Q5JTC6 1135 aaPredicted RBP35.23■■■■□ 3.23
TRIM28-204ENST00000594806 CSB-PGBD3P0DP91 1061 aa35.21■■■■□ 3.23
TRIM28-204ENST00000594806 FBLN1P23142 703 aa35.21■■■■□ 3.23
TRIM28-204ENST00000594806 RRS1Q15050 365 aaKnown RBP35.21■■■■□ 3.23
TRIM28-204ENST00000594806 BARGINQ6ZT62 677 aa35.21■■■■□ 3.23
TRIM28-204ENST00000594806 TOM1L2Q6ZVM7 507 aa35.21■■■■□ 3.23
TRIM28-204ENST00000594806 TCP11L2Q8N4U5 519 aa35.21■■■■□ 3.23
TRIM28-204ENST00000594806 HOXC9P31274 260 aa35.2■■■■□ 3.23
TRIM28-204ENST00000594806 ERBB3P21860 1342 aa35.2■■■■□ 3.23
TRIM28-204ENST00000594806 NPC1L1Q9UHC9 1359 aa35.2■■■■□ 3.23
TRIM28-204ENST00000594806 SOCS7O14512 581 aa35.19■■■■□ 3.22
TRIM28-204ENST00000594806 MAP2P11137 1827 aaKnown RBP35.19■■■■□ 3.22
TRIM28-204ENST00000594806 FAM98CQ17RN3 349 aaKnown RBP35.19■■■■□ 3.22
TRIM28-204ENST00000594806 MORC1Q86VD1 984 aa35.18■■■■□ 3.22
TRIM28-204ENST00000594806 SEPT12Q8IYM1 358 aa35.18■■■■□ 3.22
TRIM28-204ENST00000594806 CARD10Q9BWT7 1032 aa35.17■■■■□ 3.22
TRIM28-204ENST00000594806 USP35Q9P2H5 1018 aa35.17■■■■□ 3.22
TRIM28-204ENST00000594806 FLT4P35916 1363 aa35.16■■■■□ 3.22
TRIM28-204ENST00000594806 ANKRD24Q8TF21 1146 aa35.16■■■■□ 3.22
TRIM28-204ENST00000594806 FAM208AQ9UK61 1670 aaKnown RBP35.14■■■■□ 3.22
TRIM28-204ENST00000594806 THSD7AQ9UPZ6 1657 aa35.13■■■■□ 3.21
TRIM28-204ENST00000594806 INSRP06213 1382 aa35.12■■■■□ 3.21
TRIM28-204ENST00000594806 A0A0G2JS52 829 aa35.11■■■■□ 3.21
TRIM28-204ENST00000594806 MYT1Q01538 1121 aa35.11■■■■□ 3.21
TRIM28-204ENST00000594806 CDCA7Q9BWT1 371 aaPredicted RBP35.11■■■■□ 3.21
TRIM28-204ENST00000594806 POLKQ9UBT6 870 aa35.11■■■■□ 3.21
TRIM28-204ENST00000594806 EMILIN1Q9Y6C2 1016 aa35.1■■■■□ 3.21
TRIM28-204ENST00000594806 BRWD3Q6RI45 1802 aa35.09■■■■□ 3.21
TRIM28-204ENST00000594806 NLRP2Q9NX02 1062 aa35.09■■■■□ 3.21
TRIM28-204ENST00000594806 PEAK1Q9H792 1746 aa35.09■■■■□ 3.21
TRIM28-204ENST00000594806 SMG6Q86US8 1419 aaKnown RBP35.08■■■■□ 3.21
TRIM28-204ENST00000594806 TNNT2P45379 298 aaPredicted RBP35.08■■■■□ 3.21
TRIM28-204ENST00000594806 PPM1GO15355 546 aaPredicted RBP35.05■■■■□ 3.2
TRIM28-204ENST00000594806 HSP90AB2PQ58FF8 381 aa35.05■■■■□ 3.2
TRIM28-204ENST00000594806 CC2D1BQ5T0F9 858 aaKnown RBP35.05■■■■□ 3.2
TRIM28-204ENST00000594806 KRT27Q7Z3Y8 459 aa35.05■■■■□ 3.2
TRIM28-204ENST00000594806 LTV1Q96GA3 475 aaPredicted RBP35.05■■■■□ 3.2
TRIM28-204ENST00000594806 WNK3Q9BYP7 1800 aa35.03■■■■□ 3.2
TRIM28-204ENST00000594806 PARP4Q9UKK3 1724 aaKnown RBP35.03■■■■□ 3.2
TRIM28-204ENST00000594806 DISP2A7MBM2 1401 aa34.98■■■■□ 3.19
TRIM28-204ENST00000594806 PDE3BQ13370 1112 aa34.96■■■■□ 3.19
TRIM28-204ENST00000594806 IL2RBP14784 551 aa34.95■■■■□ 3.19
TRIM28-204ENST00000594806 RGPD2P0DJD1 1756 aa34.95■■■■□ 3.18
TRIM28-204ENST00000594806 DDB1Q16531 1140 aa34.94■■■■□ 3.18
TRIM28-204ENST00000594806 NBPF6Q5VWK0 638 aa34.93■■■■□ 3.18
TRIM28-204ENST00000594806 NBPF4Q96M43 638 aa34.93■■■■□ 3.18
TRIM28-204ENST00000594806 DDX10Q13206 875 aaKnown RBP34.92■■■■□ 3.18
TRIM28-204ENST00000594806 UPF1Q92900 1129 aaKnown RBP eCLIP34.91■■■■□ 3.18
TRIM28-204ENST00000594806 LRRC37A3O60309 1634 aa34.91■■■■□ 3.18
TRIM28-204ENST00000594806 EXOC5O00471 708 aa34.9■■■■□ 3.18
TRIM28-204ENST00000594806 ZNF316A6NFI3 1004 aaPredicted RBP34.88■■■■□ 3.17
TRIM28-204ENST00000594806 MTHFSP49914 203 aa34.88■■■■□ 3.17
TRIM28-204ENST00000594806 CCDC125Q86Z20 511 aa34.88■■■■□ 3.17
TRIM28-204ENST00000594806 EIF4A2Q14240 407 aaKnown RBP34.87■■■■□ 3.17
TRIM28-204ENST00000594806 FAM196AQ6ZSG2 479 aa34.87■■■■□ 3.17
TRIM28-204ENST00000594806 CNGB1Q14028 1251 aaPredicted RBP34.85■■■■□ 3.17
TRIM28-204ENST00000594806 NCAPD2Q15021 1401 aa34.84■■■■□ 3.17
TRIM28-204ENST00000594806 TNS2Q63HR2 1409 aa34.84■■■■□ 3.17
TRIM28-204ENST00000594806 RAPGEF4Q8WZA2 1011 aa34.82■■■■□ 3.16
TRIM28-204ENST00000594806 EYA1Q99502 592 aa34.82■■■■□ 3.16
TRIM28-204ENST00000594806 USHBP1Q8N6Y0 703 aa34.79■■■■□ 3.16
TRIM28-204ENST00000594806 OVOS2A0A0G2JMS6 1433 aa34.79■■■■□ 3.16
TRIM28-204ENST00000594806 TATP17735 454 aaPredicted RBP34.78■■■■□ 3.16
TRIM28-204ENST00000594806 FAM182BQ5T319 152 aa34.77■■■■□ 3.16
TRIM28-204ENST00000594806 BCL9O00512 1426 aa34.77■■■■□ 3.16
TRIM28-204ENST00000594806 IGSF1Q8N6C5 1336 aa34.77■■■■□ 3.16
TRIM28-204ENST00000594806 PARD3Q8TEW0 1356 aa34.76■■■■□ 3.16
TRIM28-204ENST00000594806 IL13P35225 146 aa34.76■■■■□ 3.16
TRIM28-204ENST00000594806 MARCH10Q8NA82 808 aaPredicted RBP34.76■■■■□ 3.16
TRIM28-204ENST00000594806 MEGF6O75095 1541 aa34.76■■■■□ 3.15
TRIM28-204ENST00000594806 PLEKHG2Q9H7P9 1386 aa34.75■■■■□ 3.15
TRIM28-204ENST00000594806 PPP2R1AP30153 589 aa34.75■■■■□ 3.15
TRIM28-204ENST00000594806 RALBP1Q15311 655 aa34.74■■■■□ 3.15
TRIM28-204ENST00000594806 ZCRB1Q8TBF4 217 aaKnown RBP34.74■■■■□ 3.15
TRIM28-204ENST00000594806 SF3B2Q13435 895 aaKnown RBP34.73■■■■□ 3.15
TRIM28-204ENST00000594806 CFAP53Q96M91 514 aa34.73■■■■□ 3.15
TRIM28-204ENST00000594806 DIAPH1O60610 1272 aaKnown RBP34.72■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms