RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 EVA1CP58658 441 aa20.14■□□□□ 0.81
VRK3-206ENST00000594090 LARP1Q6PKG0 1096 aaKnown RBP20.13■□□□□ 0.81
VRK3-206ENST00000594090 GGNBP2Q9H3C7 697 aa20.13■□□□□ 0.81
VRK3-206ENST00000594090 SPATA31A1Q5TZJ5 1347 aa20.13■□□□□ 0.81
VRK3-206ENST00000594090 THSD7AQ9UPZ6 1657 aa20.13■□□□□ 0.81
VRK3-206ENST00000594090 AXIN2Q9Y2T1 843 aa20.12■□□□□ 0.81
VRK3-206ENST00000594090 BRWD3Q6RI45 1802 aa20.12■□□□□ 0.81
VRK3-206ENST00000594090 ONECUT3O60422 494 aaPredicted RBP20.11■□□□□ 0.81
VRK3-206ENST00000594090 FAM98CQ17RN3 349 aaKnown RBP20.1■□□□□ 0.81
VRK3-206ENST00000594090 PANK3Q9H999 370 aa20.1■□□□□ 0.81
VRK3-206ENST00000594090 CGNL1Q0VF96 1302 aa20.1■□□□□ 0.81
VRK3-206ENST00000594090 CRB1P82279 1406 aa20.1■□□□□ 0.81
VRK3-206ENST00000594090 ANKRD26Q9UPS8 1709 aa20.1■□□□□ 0.81
VRK3-206ENST00000594090 SEPT12Q8IYM1 358 aa20.1■□□□□ 0.81
VRK3-206ENST00000594090 WDR17Q8IZU2 1322 aa20.08■□□□□ 0.8
VRK3-206ENST00000594090 CCDC7Q96M83 1385 aa20.08■□□□□ 0.8
VRK3-206ENST00000594090 USP35Q9P2H5 1018 aa20.08■□□□□ 0.8
VRK3-206ENST00000594090 A0A0G2JS52 829 aa20.07■□□□□ 0.8
VRK3-206ENST00000594090 MYT1Q01538 1121 aa20.07■□□□□ 0.8
VRK3-206ENST00000594090 BLMP54132 1417 aaPredicted RBP20.06■□□□□ 0.8
VRK3-206ENST00000594090 MAP3K19Q56UN5 1328 aa20.06■□□□□ 0.8
VRK3-206ENST00000594090 FBLN1P23142 703 aa20.06■□□□□ 0.8
VRK3-206ENST00000594090 WNK3Q9BYP7 1800 aa20.06■□□□□ 0.8
VRK3-206ENST00000594090 WASHC2AQ641Q2 1341 aa20.05■□□□□ 0.8
VRK3-206ENST00000594090 BARGINQ6ZT62 677 aa20.05■□□□□ 0.8
VRK3-206ENST00000594090 TOM1L2Q6ZVM7 507 aa20.05■□□□□ 0.8
VRK3-206ENST00000594090 TCP11L2Q8N4U5 519 aa20.05■□□□□ 0.8
VRK3-206ENST00000594090 ERBB3P21860 1342 aa20.04■□□□□ 0.8
VRK3-206ENST00000594090 THRAP3Q9Y2W1 955 aaKnown RBP20.04■□□□□ 0.8
VRK3-206ENST00000594090 RTL1A6NKG5 1358 aa20.04■□□□□ 0.8
VRK3-206ENST00000594090 CSB-PGBD3P0DP91 1061 aa20.03■□□□□ 0.8
VRK3-206ENST00000594090 IP6K1Q92551 441 aa20.03■□□□□ 0.8
VRK3-206ENST00000594090 PARP4Q9UKK3 1724 aaKnown RBP20.03■□□□□ 0.8
VRK3-206ENST00000594090 FAM208AQ9UK61 1670 aaKnown RBP20.03■□□□□ 0.8
VRK3-206ENST00000594090 NSD2O96028 1365 aa20.03■□□□□ 0.8
VRK3-206ENST00000594090 PEAK1Q9H792 1746 aa20.03■□□□□ 0.8
VRK3-206ENST00000594090 RRS1Q15050 365 aaKnown RBP20.02■□□□□ 0.8
VRK3-206ENST00000594090 UPF1Q92900 1129 aaKnown RBP eCLIP20.02■□□□□ 0.8
VRK3-206ENST00000594090 EP400Q96L91 3159 aa20.02■□□□□ 0.8
VRK3-206ENST00000594090 HOXC9P31274 260 aa20.02■□□□□ 0.79
VRK3-206ENST00000594090 AMPHP49418 695 aa20.02■□□□□ 0.79
VRK3-206ENST00000594090 KRT27Q7Z3Y8 459 aa20.01■□□□□ 0.79
VRK3-206ENST00000594090 ANKRD24Q8TF21 1146 aa20.01■□□□□ 0.79
VRK3-206ENST00000594090 CARD10Q9BWT7 1032 aa20■□□□□ 0.79
VRK3-206ENST00000594090 LRRC37A3O60309 1634 aa19.99■□□□□ 0.79
VRK3-206ENST00000594090 KNSTRNQ9Y448 316 aa19.99■□□□□ 0.79
VRK3-206ENST00000594090 KIF24Q5T7B8 1368 aa19.99■□□□□ 0.79
VRK3-206ENST00000594090 FLT4P35916 1363 aa19.98■□□□□ 0.79
VRK3-206ENST00000594090 DISP2A7MBM2 1401 aa19.97■□□□□ 0.79
VRK3-206ENST00000594090 MAP2P11137 1827 aaKnown RBP19.97■□□□□ 0.79
VRK3-206ENST00000594090 LTV1Q96GA3 475 aaPredicted RBP19.95■□□□□ 0.78
VRK3-206ENST00000594090 NLRP2Q9NX02 1062 aa19.95■□□□□ 0.78
VRK3-206ENST00000594090 EMILIN1Q9Y6C2 1016 aa19.95■□□□□ 0.78
VRK3-206ENST00000594090 RGPD2P0DJD1 1756 aa19.95■□□□□ 0.78
VRK3-206ENST00000594090 INSRP06213 1382 aa19.95■□□□□ 0.78
VRK3-206ENST00000594090 AMER1Q5JTC6 1135 aaPredicted RBP19.94■□□□□ 0.78
VRK3-206ENST00000594090 SMG6Q86US8 1419 aaKnown RBP19.94■□□□□ 0.78
VRK3-206ENST00000594090 PER1O15534 1290 aaPredicted RBP19.93■□□□□ 0.78
VRK3-206ENST00000594090 ZEB1P37275 1124 aaPredicted RBP19.93■□□□□ 0.78
VRK3-206ENST00000594090 TNNT2P45379 298 aaPredicted RBP19.93■□□□□ 0.78
VRK3-206ENST00000594090 CDCA7Q9BWT1 371 aaPredicted RBP19.93■□□□□ 0.78
VRK3-206ENST00000594090 HSP90AB2PQ58FF8 381 aa19.93■□□□□ 0.78
VRK3-206ENST00000594090 PDE3BQ13370 1112 aa19.92■□□□□ 0.78
VRK3-206ENST00000594090 FAM182BQ5T319 152 aa19.92■□□□□ 0.78
VRK3-206ENST00000594090 POLKQ9UBT6 870 aa19.92■□□□□ 0.78
VRK3-206ENST00000594090 MORC1Q86VD1 984 aa19.91■□□□□ 0.78
VRK3-206ENST00000594090 TNS2Q63HR2 1409 aa19.9■□□□□ 0.78
VRK3-206ENST00000594090 PPM1GO15355 546 aaPredicted RBP19.9■□□□□ 0.78
VRK3-206ENST00000594090 DDB1Q16531 1140 aa19.9■□□□□ 0.78
VRK3-206ENST00000594090 NPC1L1Q9UHC9 1359 aa19.89■□□□□ 0.77
VRK3-206ENST00000594090 IL2RBP14784 551 aa19.88■□□□□ 0.77
VRK3-206ENST00000594090 CCDC125Q86Z20 511 aa19.88■□□□□ 0.77
VRK3-206ENST00000594090 RGPD1P0DJD0 1748 aa19.88■□□□□ 0.77
VRK3-206ENST00000594090 OVOS2A0A0G2JMS6 1433 aa19.87■□□□□ 0.77
VRK3-206ENST00000594090 TNS1Q9HBL0 1735 aaKnown RBP19.87■□□□□ 0.77
VRK3-206ENST00000594090 CC2D1BQ5T0F9 858 aaKnown RBP19.86■□□□□ 0.77
VRK3-206ENST00000594090 FAM196AQ6ZSG2 479 aa19.86■□□□□ 0.77
VRK3-206ENST00000594090 NBPF6Q5VWK0 638 aa19.85■□□□□ 0.77
VRK3-206ENST00000594090 NBPF4Q96M43 638 aa19.85■□□□□ 0.77
VRK3-206ENST00000594090 MEGF6O75095 1541 aa19.84■□□□□ 0.77
VRK3-206ENST00000594090 EXOC5O00471 708 aa19.84■□□□□ 0.77
VRK3-206ENST00000594090 NCAPD2Q15021 1401 aa19.83■□□□□ 0.76
VRK3-206ENST00000594090 SF3B2Q13435 895 aaKnown RBP19.83■□□□□ 0.76
VRK3-206ENST00000594090 USHBP1Q8N6Y0 703 aa19.83■□□□□ 0.76
VRK3-206ENST00000594090 MARCH10Q8NA82 808 aaPredicted RBP19.83■□□□□ 0.76
VRK3-206ENST00000594090 SBF2Q86WG5 1849 aa19.82■□□□□ 0.76
VRK3-206ENST00000594090 SHANK3Q9BYB0 1731 aa19.81■□□□□ 0.76
VRK3-206ENST00000594090 BCL9O00512 1426 aa19.81■□□□□ 0.76
VRK3-206ENST00000594090 TRIM37O94972 964 aa19.8■□□□□ 0.76
VRK3-206ENST00000594090 EIF4A2Q14240 407 aaKnown RBP19.8■□□□□ 0.76
VRK3-206ENST00000594090 CNGB1Q14028 1251 aaPredicted RBP19.79■□□□□ 0.76
VRK3-206ENST00000594090 DEFB132Q7Z7B7 95 aa19.77■□□□□ 0.76
VRK3-206ENST00000594090 RAPGEF4Q8WZA2 1011 aa19.77■□□□□ 0.76
VRK3-206ENST00000594090 EYA1Q99502 592 aa19.77■□□□□ 0.76
VRK3-206ENST00000594090 BAG6P46379 1132 aa19.76■□□□□ 0.75
VRK3-206ENST00000594090 MTHFSP49914 203 aa19.76■□□□□ 0.75
VRK3-206ENST00000594090 PKD1L3Q7Z443 1732 aa19.76■□□□□ 0.75
VRK3-206ENST00000594090 NHSQ6T4R5 1651 aa19.76■□□□□ 0.75
VRK3-206ENST00000594090 ZCRB1Q8TBF4 217 aaKnown RBP19.76■□□□□ 0.75
VRK3-206ENST00000594090 IGSF1Q8N6C5 1336 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms