RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 SPATA31A5Q5VU36 1347 aa16.43■□□□□ 0.22
LIG3-213ENST00000590630 SPATA31A7Q8IWB4 1347 aa16.43■□□□□ 0.22
LIG3-213ENST00000590630 CGNL1Q0VF96 1302 aa16.42■□□□□ 0.22
LIG3-213ENST00000590630 ANKRD26Q9UPS8 1709 aa16.42■□□□□ 0.22
LIG3-213ENST00000590630 BRWD3Q6RI45 1802 aa16.41■□□□□ 0.22
LIG3-213ENST00000590630 GGNBP2Q9H3C7 697 aa16.41■□□□□ 0.22
LIG3-213ENST00000590630 ONECUT3O60422 494 aaPredicted RBP16.4■□□□□ 0.22
LIG3-213ENST00000590630 PANK3Q9H999 370 aa16.4■□□□□ 0.22
LIG3-213ENST00000590630 SPATA31A1Q5TZJ5 1347 aa16.4■□□□□ 0.22
LIG3-213ENST00000590630 AXIN2Q9Y2T1 843 aa16.39■□□□□ 0.21
LIG3-213ENST00000590630 CCDC7Q96M83 1385 aa16.38■□□□□ 0.21
LIG3-213ENST00000590630 CRB1P82279 1406 aa16.38■□□□□ 0.21
LIG3-213ENST00000590630 THSD7AQ9UPZ6 1657 aa16.38■□□□□ 0.21
LIG3-213ENST00000590630 LARP1Q6PKG0 1096 aaKnown RBP16.38■□□□□ 0.21
LIG3-213ENST00000590630 BLMP54132 1417 aaPredicted RBP16.37■□□□□ 0.21
LIG3-213ENST00000590630 WDR17Q8IZU2 1322 aa16.37■□□□□ 0.21
LIG3-213ENST00000590630 FAM98CQ17RN3 349 aaKnown RBP16.36■□□□□ 0.21
LIG3-213ENST00000590630 SEPT12Q8IYM1 358 aa16.36■□□□□ 0.21
LIG3-213ENST00000590630 WASHC2AQ641Q2 1341 aa16.36■□□□□ 0.21
LIG3-213ENST00000590630 FAM208AQ9UK61 1670 aaKnown RBP16.36■□□□□ 0.21
LIG3-213ENST00000590630 NSD2O96028 1365 aa16.36■□□□□ 0.21
LIG3-213ENST00000590630 WNK3Q9BYP7 1800 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 ZEB1P37275 1124 aaPredicted RBP16.35■□□□□ 0.21
LIG3-213ENST00000590630 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 TCP11L2Q8N4U5 519 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 USP35Q9P2H5 1018 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 THRAP3Q9Y2W1 955 aaKnown RBP16.35■□□□□ 0.21
LIG3-213ENST00000590630 MAP3K19Q56UN5 1328 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 MAP2P11137 1827 aaKnown RBP16.35■□□□□ 0.21
LIG3-213ENST00000590630 RTL1A6NKG5 1358 aa16.35■□□□□ 0.21
LIG3-213ENST00000590630 A0A0G2JS52 829 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 MYT1Q01538 1121 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 TOM1L2Q6ZVM7 507 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 IP6K1Q92551 441 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 KNSTRNQ9Y448 316 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 ERBB3P21860 1342 aa16.34■□□□□ 0.21
LIG3-213ENST00000590630 CSB-PGBD3P0DP91 1061 aa16.33■□□□□ 0.2
LIG3-213ENST00000590630 KIF24Q5T7B8 1368 aa16.33■□□□□ 0.2
LIG3-213ENST00000590630 PARP4Q9UKK3 1724 aaKnown RBP16.33■□□□□ 0.2
LIG3-213ENST00000590630 AMPHP49418 695 aa16.32■□□□□ 0.2
LIG3-213ENST00000590630 PEAK1Q9H792 1746 aa16.31■□□□□ 0.2
LIG3-213ENST00000590630 FBLN1P23142 703 aa16.31■□□□□ 0.2
LIG3-213ENST00000590630 HOXC9P31274 260 aa16.31■□□□□ 0.2
LIG3-213ENST00000590630 RRS1Q15050 365 aaKnown RBP16.31■□□□□ 0.2
LIG3-213ENST00000590630 CARD10Q9BWT7 1032 aa16.31■□□□□ 0.2
LIG3-213ENST00000590630 FLT4P35916 1363 aa16.3■□□□□ 0.2
LIG3-213ENST00000590630 KRT27Q7Z3Y8 459 aa16.3■□□□□ 0.2
LIG3-213ENST00000590630 ANKRD24Q8TF21 1146 aa16.3■□□□□ 0.2
LIG3-213ENST00000590630 LRRC37A3O60309 1634 aa16.28■□□□□ 0.2
LIG3-213ENST00000590630 PER1O15534 1290 aaPredicted RBP16.28■□□□□ 0.2
LIG3-213ENST00000590630 AMER1Q5JTC6 1135 aaPredicted RBP16.28■□□□□ 0.2
LIG3-213ENST00000590630 UPF1Q92900 1129 aaKnown RBP eCLIP16.28■□□□□ 0.2
LIG3-213ENST00000590630 CDCA7Q9BWT1 371 aaPredicted RBP16.28■□□□□ 0.2
LIG3-213ENST00000590630 RGPD2P0DJD1 1756 aa16.28■□□□□ 0.2
LIG3-213ENST00000590630 SMG6Q86US8 1419 aaKnown RBP16.28■□□□□ 0.2
LIG3-213ENST00000590630 INSRP06213 1382 aa16.27■□□□□ 0.2
LIG3-213ENST00000590630 NLRP2Q9NX02 1062 aa16.27■□□□□ 0.2
LIG3-213ENST00000590630 MORC1Q86VD1 984 aa16.26■□□□□ 0.19
LIG3-213ENST00000590630 DISP2A7MBM2 1401 aa16.26■□□□□ 0.19
LIG3-213ENST00000590630 NPC1L1Q9UHC9 1359 aa16.26■□□□□ 0.19
LIG3-213ENST00000590630 LTV1Q96GA3 475 aaPredicted RBP16.25■□□□□ 0.19
LIG3-213ENST00000590630 EMILIN1Q9Y6C2 1016 aa16.25■□□□□ 0.19
LIG3-213ENST00000590630 TNNT2P45379 298 aaPredicted RBP16.24■□□□□ 0.19
LIG3-213ENST00000590630 PDE3BQ13370 1112 aa16.24■□□□□ 0.19
LIG3-213ENST00000590630 HSP90AB2PQ58FF8 381 aa16.24■□□□□ 0.19
LIG3-213ENST00000590630 POLKQ9UBT6 870 aa16.24■□□□□ 0.19
LIG3-213ENST00000590630 PPM1GO15355 546 aaPredicted RBP16.23■□□□□ 0.19
LIG3-213ENST00000590630 CCDC125Q86Z20 511 aa16.23■□□□□ 0.19
LIG3-213ENST00000590630 DDB1Q16531 1140 aa16.22■□□□□ 0.19
LIG3-213ENST00000590630 RGPD1P0DJD0 1748 aa16.22■□□□□ 0.19
LIG3-213ENST00000590630 IL2RBP14784 551 aa16.21■□□□□ 0.19
LIG3-213ENST00000590630 TNS2Q63HR2 1409 aa16.2■□□□□ 0.18
LIG3-213ENST00000590630 FAM196AQ6ZSG2 479 aa16.2■□□□□ 0.18
LIG3-213ENST00000590630 CC2D1BQ5T0F9 858 aaKnown RBP16.19■□□□□ 0.18
LIG3-213ENST00000590630 FAM182BQ5T319 152 aa16.19■□□□□ 0.18
LIG3-213ENST00000590630 OVOS2A0A0G2JMS6 1433 aa16.19■□□□□ 0.18
LIG3-213ENST00000590630 SBF2Q86WG5 1849 aa16.18■□□□□ 0.18
LIG3-213ENST00000590630 EXOC5O00471 708 aa16.18■□□□□ 0.18
LIG3-213ENST00000590630 NBPF6Q5VWK0 638 aa16.18■□□□□ 0.18
LIG3-213ENST00000590630 NBPF4Q96M43 638 aa16.18■□□□□ 0.18
LIG3-213ENST00000590630 TNS1Q9HBL0 1735 aaKnown RBP16.17■□□□□ 0.18
LIG3-213ENST00000590630 NCAPD2Q15021 1401 aa16.17■□□□□ 0.18
LIG3-213ENST00000590630 SF3B2Q13435 895 aaKnown RBP16.16■□□□□ 0.18
LIG3-213ENST00000590630 BCL9O00512 1426 aa16.16■□□□□ 0.18
LIG3-213ENST00000590630 MEGF6O75095 1541 aa16.15■□□□□ 0.18
LIG3-213ENST00000590630 SHANK3Q9BYB0 1731 aa16.14■□□□□ 0.17
LIG3-213ENST00000590630 EIF4A2Q14240 407 aaKnown RBP16.14■□□□□ 0.17
LIG3-213ENST00000590630 USHBP1Q8N6Y0 703 aa16.14■□□□□ 0.17
LIG3-213ENST00000590630 MARCH10Q8NA82 808 aaPredicted RBP16.14■□□□□ 0.17
LIG3-213ENST00000590630 RAPGEF4Q8WZA2 1011 aa16.14■□□□□ 0.17
LIG3-213ENST00000590630 KAT6BQ8WYB5 2073 aa16.13■□□□□ 0.17
LIG3-213ENST00000590630 PKD1L3Q7Z443 1732 aa16.12■□□□□ 0.17
LIG3-213ENST00000590630 MTHFSP49914 203 aa16.12■□□□□ 0.17
LIG3-213ENST00000590630 EYA1Q99502 592 aa16.12■□□□□ 0.17
LIG3-213ENST00000590630 TRIM37O94972 964 aa16.11■□□□□ 0.17
LIG3-213ENST00000590630 TATP17735 454 aaPredicted RBP16.11■□□□□ 0.17
LIG3-213ENST00000590630 CNGB1Q14028 1251 aaPredicted RBP16.11■□□□□ 0.17
LIG3-213ENST00000590630 IGSF1Q8N6C5 1336 aa16.11■□□□□ 0.17
LIG3-213ENST00000590630 BAG6P46379 1132 aa16.1■□□□□ 0.17
LIG3-213ENST00000590630 ZCRB1Q8TBF4 217 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms