RNA–Protein interactions for RNA: ENST00000578709.5

ERBB2-209, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 4

Gene ERBB2, Length 559 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-209	ENST00000578709	COL5A2	P05997	1499 aa	Predicted RBP	32.54	■■■□□ 2.8
ERBB2-209	ENST00000578709	AXIN2	Q9Y2T1	843 aa		32.54	■■■□□ 2.8
ERBB2-209	ENST00000578709	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.53	■■■□□ 2.8
ERBB2-209	ENST00000578709	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.53	■■■□□ 2.8
ERBB2-209	ENST00000578709	GLI3	P10071	1580 aa		32.52	■■■□□ 2.8
ERBB2-209	ENST00000578709	FBLN1	P23142	703 aa		32.51	■■■□□ 2.79
ERBB2-209	ENST00000578709	STRN4	Q9NRL3	753 aa		32.51	■■■□□ 2.79
ERBB2-209	ENST00000578709	MAP3K19	Q56UN5	1328 aa		32.51	■■■□□ 2.79
ERBB2-209	ENST00000578709	RGPD5	Q99666	1765 aa		32.5	■■■□□ 2.79
ERBB2-209	ENST00000578709	EVA1C	P58658	441 aa		32.5	■■■□□ 2.79
ERBB2-209	ENST00000578709	SPATA31A5	Q5VU36	1347 aa		32.5	■■■□□ 2.79
ERBB2-209	ENST00000578709	SPATA31A7	Q8IWB4	1347 aa		32.5	■■■□□ 2.79
ERBB2-209	ENST00000578709	IP6K1	Q92551	441 aa		32.47	■■■□□ 2.79
ERBB2-209	ENST00000578709	CCDC9	Q9Y3X0	531 aa	Known RBP	32.47	■■■□□ 2.79
ERBB2-209	ENST00000578709	NPC1L1	Q9UHC9	1359 aa		32.46	■■■□□ 2.79
ERBB2-209	ENST00000578709	RRS1	Q15050	365 aa	Known RBP	32.46	■■■□□ 2.79
ERBB2-209	ENST00000578709	LARP1	Q6PKG0	1096 aa	Known RBP	32.46	■■■□□ 2.79
ERBB2-209	ENST00000578709	RTL1	A6NKG5	1358 aa		32.45	■■■□□ 2.79
ERBB2-209	ENST00000578709	BLM	P54132	1417 aa	Predicted RBP	32.45	■■■□□ 2.79
ERBB2-209	ENST00000578709	SPATA31A1	Q5TZJ5	1347 aa		32.45	■■■□□ 2.78
ERBB2-209	ENST00000578709	WDR17	Q8IZU2	1322 aa		32.43	■■■□□ 2.78
ERBB2-209	ENST00000578709	KIF24	Q5T7B8	1368 aa		32.43	■■■□□ 2.78
ERBB2-209	ENST00000578709	RGS12	O14924	1447 aa		32.43	■■■□□ 2.78
ERBB2-209	ENST00000578709	HOXC9	P31274	260 aa		32.42	■■■□□ 2.78
ERBB2-209	ENST00000578709	AMPH	P49418	695 aa		32.42	■■■□□ 2.78
ERBB2-209	ENST00000578709	CRB1	P82279	1406 aa		32.42	■■■□□ 2.78
ERBB2-209	ENST00000578709	ONECUT3	O60422	494 aa	Predicted RBP	32.41	■■■□□ 2.78
ERBB2-209	ENST00000578709	MORC1	Q86VD1	984 aa		32.41	■■■□□ 2.78
ERBB2-209	ENST00000578709	MAP2	P11137	1827 aa	Known RBP	32.41	■■■□□ 2.78
ERBB2-209	ENST00000578709	ERBB3	P21860	1342 aa		32.4	■■■□□ 2.78
ERBB2-209	ENST00000578709	PEAK1	Q9H792	1746 aa		32.4	■■■□□ 2.78
ERBB2-209	ENST00000578709	FLT4	P35916	1363 aa		32.37	■■■□□ 2.77
ERBB2-209	ENST00000578709	TNNT2	P45379	298 aa	Predicted RBP	32.37	■■■□□ 2.77
ERBB2-209	ENST00000578709	POLK	Q9UBT6	870 aa		32.37	■■■□□ 2.77
ERBB2-209	ENST00000578709	EMILIN1	Q9Y6C2	1016 aa		32.37	■■■□□ 2.77
ERBB2-209	ENST00000578709	TOM1L2	Q6ZVM7	507 aa		32.36	■■■□□ 2.77
ERBB2-209	ENST00000578709	ANKRD24	Q8TF21	1146 aa		32.36	■■■□□ 2.77
ERBB2-209	ENST00000578709	CSB-PGBD3	P0DP91	1061 aa		32.35	■■■□□ 2.77
ERBB2-209	ENST00000578709	CC2D1B	Q5T0F9	858 aa	Known RBP	32.35	■■■□□ 2.77
ERBB2-209	ENST00000578709	TCP11L2	Q8N4U5	519 aa		32.35	■■■□□ 2.77
ERBB2-209	ENST00000578709	THRAP3	Q9Y2W1	955 aa	Known RBP	32.35	■■■□□ 2.77
ERBB2-209	ENST00000578709	FAM98C	Q17RN3	349 aa	Known RBP	32.34	■■■□□ 2.77
ERBB2-209	ENST00000578709	BARGIN	Q6ZT62	677 aa		32.34	■■■□□ 2.77
ERBB2-209	ENST00000578709	INSR	P06213	1382 aa		32.33	■■■□□ 2.77
ERBB2-209	ENST00000578709	CARD10	Q9BWT7	1032 aa		32.33	■■■□□ 2.77
ERBB2-209	ENST00000578709	USP35	Q9P2H5	1018 aa		32.33	■■■□□ 2.77
ERBB2-209	ENST00000578709	SMG6	Q86US8	1419 aa	Known RBP	32.33	■■■□□ 2.77
ERBB2-209	ENST00000578709	THSD7A	Q9UPZ6	1657 aa		32.32	■■■□□ 2.76
ERBB2-209	ENST00000578709	FAM208A	Q9UK61	1670 aa	Known RBP	32.31	■■■□□ 2.76
ERBB2-209	ENST00000578709	HSP90AB2P	Q58FF8	381 aa		32.31	■■■□□ 2.76
ERBB2-209	ENST00000578709	SEPT12	Q8IYM1	358 aa		32.31	■■■□□ 2.76
ERBB2-209	ENST00000578709	DDX10	Q13206	875 aa	Known RBP	32.29	■■■□□ 2.76
ERBB2-209	ENST00000578709	PPM1G	O15355	546 aa	Predicted RBP	32.28	■■■□□ 2.76
ERBB2-209	ENST00000578709	LTV1	Q96GA3	475 aa	Predicted RBP	32.28	■■■□□ 2.76
ERBB2-209	ENST00000578709	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.27	■■■□□ 2.76
ERBB2-209	ENST00000578709	NLRP2	Q9NX02	1062 aa		32.27	■■■□□ 2.76
ERBB2-209	ENST00000578709	BRWD3	Q6RI45	1802 aa		32.26	■■■□□ 2.75
ERBB2-209	ENST00000578709	WNK3	Q9BYP7	1800 aa		32.23	■■■□□ 2.75
ERBB2-209	ENST00000578709		A0A0G2JS52	829 aa		32.22	■■■□□ 2.75
ERBB2-209	ENST00000578709	MYT1	Q01538	1121 aa		32.22	■■■□□ 2.75
ERBB2-209	ENST00000578709	DISP2	A7MBM2	1401 aa		32.21	■■■□□ 2.75
ERBB2-209	ENST00000578709	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.21	■■■□□ 2.75
ERBB2-209	ENST00000578709	RGPD2	P0DJD1	1756 aa		32.21	■■■□□ 2.75
ERBB2-209	ENST00000578709	PARP4	Q9UKK3	1724 aa	Known RBP	32.2	■■■□□ 2.75
ERBB2-209	ENST00000578709	CNGB1	Q14028	1251 aa	Predicted RBP	32.2	■■■□□ 2.75
ERBB2-209	ENST00000578709	NBPF6	Q5VWK0	638 aa		32.17	■■■□□ 2.74
ERBB2-209	ENST00000578709	NBPF4	Q96M43	638 aa		32.17	■■■□□ 2.74
ERBB2-209	ENST00000578709	SOCS7	O14512	581 aa		32.16	■■■□□ 2.74
ERBB2-209	ENST00000578709	MTHFS	P49914	203 aa		32.16	■■■□□ 2.74
ERBB2-209	ENST00000578709	KRT27	Q7Z3Y8	459 aa		32.16	■■■□□ 2.74
ERBB2-209	ENST00000578709	EIF4A2	Q14240	407 aa	Known RBP	32.14	■■■□□ 2.74
ERBB2-209	ENST00000578709	LRRC37A3	O60309	1634 aa		32.13	■■■□□ 2.73
ERBB2-209	ENST00000578709	NCAPD2	Q15021	1401 aa		32.13	■■■□□ 2.73
ERBB2-209	ENST00000578709	PARD3	Q8TEW0	1356 aa		32.13	■■■□□ 2.73
ERBB2-209	ENST00000578709	IL2RB	P14784	551 aa		32.12	■■■□□ 2.73
ERBB2-209	ENST00000578709	EP400	Q96L91	3159 aa		32.11	■■■□□ 2.73
ERBB2-209	ENST00000578709	DDB1	Q16531	1140 aa		32.09	■■■□□ 2.73
ERBB2-209	ENST00000578709	EYA1	Q99502	592 aa		32.09	■■■□□ 2.73
ERBB2-209	ENST00000578709	PPP2R1A	P30153	589 aa		32.08	■■■□□ 2.73
ERBB2-209	ENST00000578709	USHBP1	Q8N6Y0	703 aa		32.08	■■■□□ 2.73
ERBB2-209	ENST00000578709	PDE3B	Q13370	1112 aa		32.07	■■■□□ 2.72
ERBB2-209	ENST00000578709	TNS2	Q63HR2	1409 aa		32.06	■■■□□ 2.72
ERBB2-209	ENST00000578709	IL13	P35225	146 aa		32.05	■■■□□ 2.72
ERBB2-209	ENST00000578709	MEGF6	O75095	1541 aa		32.05	■■■□□ 2.72
ERBB2-209	ENST00000578709	IGSF1	Q8N6C5	1336 aa		32.04	■■■□□ 2.72
ERBB2-209	ENST00000578709	EXOC5	O00471	708 aa		32.04	■■■□□ 2.72
ERBB2-209	ENST00000578709	COL3A1	P02461	1466 aa	Predicted RBP	32.03	■■■□□ 2.72
ERBB2-209	ENST00000578709	RALBP1	Q15311	655 aa		32.03	■■■□□ 2.72
ERBB2-209	ENST00000578709	OVOS2	A0A0G2JMS6	1433 aa		32.02	■■■□□ 2.72
ERBB2-209	ENST00000578709	RGPD1	P0DJD0	1748 aa		32.02	■■■□□ 2.72
ERBB2-209	ENST00000578709	RAPGEF4	Q8WZA2	1011 aa		32.01	■■■□□ 2.71
ERBB2-209	ENST00000578709	FAM182B	Q5T319	152 aa		32	■■■□□ 2.71
ERBB2-209	ENST00000578709	UPF1	Q92900	1129 aa	Known RBP eCLIP	32	■■■□□ 2.71
ERBB2-209	ENST00000578709	DIAPH1	O60610	1272 aa	Known RBP	31.98	■■■□□ 2.71
ERBB2-209	ENST00000578709	FAM196A	Q6ZSG2	479 aa		31.98	■■■□□ 2.71
ERBB2-209	ENST00000578709	MARCH10	Q8NA82	808 aa	Predicted RBP	31.98	■■■□□ 2.71
ERBB2-209	ENST00000578709	TAT	P17735	454 aa	Predicted RBP	31.97	■■■□□ 2.71
ERBB2-209	ENST00000578709	CFAP53	Q96M91	514 aa		31.96	■■■□□ 2.71
ERBB2-209	ENST00000578709	BCL9	O00512	1426 aa		31.95	■■■□□ 2.71
ERBB2-209	ENST00000578709	PLEKHG2	Q9H7P9	1386 aa		31.94	■■■□□ 2.7

Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms