RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ZBTB7AO95365 584 aa14.19□□□□□ -0.14
SS18-210ENST00000578700 ATF5Q9Y2D1 282 aaPredicted RBP14.19□□□□□ -0.14
SS18-210ENST00000578700 PEAK1Q9H792 1746 aa14.18□□□□□ -0.14
SS18-210ENST00000578700 PLSCR1O15162 318 aa14.18□□□□□ -0.14
SS18-210ENST00000578700 SOX12O15370 315 aa14.18□□□□□ -0.14
SS18-210ENST00000578700 PDGFDQ9GZP0 370 aaPredicted RBP14.18□□□□□ -0.14
SS18-210ENST00000578700 ANO8Q9HCE9 1232 aaPredicted RBP14.18□□□□□ -0.14
SS18-210ENST00000578700 CABP1Q9NZU7 370 aa14.18□□□□□ -0.14
SS18-210ENST00000578700 PPIP5K1Q6PFW1 1433 aa14.17□□□□□ -0.14
SS18-210ENST00000578700 CSB-PGBD3P0DP91 1061 aa14.17□□□□□ -0.14
SS18-210ENST00000578700 COL5A2P05997 1499 aaPredicted RBP14.17□□□□□ -0.14
SS18-210ENST00000578700 OVOS2A0A0G2JMS6 1433 aa14.16□□□□□ -0.14
SS18-210ENST00000578700 OVOS2A0A0J9YW53 1432 aa14.16□□□□□ -0.14
SS18-210ENST00000578700 CRB1P82279 1406 aa14.16□□□□□ -0.14
SS18-210ENST00000578700 OVOS2Q6IE36 1432 aa14.16□□□□□ -0.14
SS18-210ENST00000578700 NINLQ9Y2I6 1382 aa14.16□□□□□ -0.14
SS18-210ENST00000578700 CENPJQ9HC77 1338 aaPredicted RBP14.15□□□□□ -0.14
SS18-210ENST00000578700 WNK3Q9BYP7 1800 aa14.15□□□□□ -0.14
SS18-210ENST00000578700 PROM2Q8N271 834 aa14.15□□□□□ -0.14
SS18-210ENST00000578700 MARCH10Q8NA82 808 aaPredicted RBP14.15□□□□□ -0.14
SS18-210ENST00000578700 AXIN2Q9Y2T1 843 aa14.15□□□□□ -0.14
SS18-210ENST00000578700 LRRC37A3O60309 1634 aa14.15□□□□□ -0.14
SS18-210ENST00000578700 AKAP12Q02952 1782 aa14.14□□□□□ -0.15
SS18-210ENST00000578700 CASZ1Q86V15 1759 aa14.14□□□□□ -0.15
SS18-210ENST00000578700 EIF4G2P78344 907 aaKnown RBP eCLIP14.14□□□□□ -0.15
SS18-210ENST00000578700 STK32BQ9NY57 414 aa14.14□□□□□ -0.15
SS18-210ENST00000578700 BRD4O60885 1362 aaPredicted RBP14.13□□□□□ -0.15
SS18-210ENST00000578700 AATKQ6ZMQ8 1374 aa14.12□□□□□ -0.15
SS18-210ENST00000578700 EXOC5O00471 708 aa14.12□□□□□ -0.15
SS18-210ENST00000578700 COL18A1P39060 1754 aa14.11□□□□□ -0.15
SS18-210ENST00000578700 TXNRD1Q16881 649 aa14.11□□□□□ -0.15
SS18-210ENST00000578700 WDR17Q8IZU2 1322 aa14.11□□□□□ -0.15
SS18-210ENST00000578700 SLIT3O75094 1523 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 CHD4Q14839 1912 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 RGPD5Q99666 1765 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 PTGER2P43116 358 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 SLC15A2Q16348 729 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 ACSBG1Q96GR2 724 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 CDCA7Q9BWT1 371 aaPredicted RBP14.1□□□□□ -0.15
SS18-210ENST00000578700 FHDC1Q9C0D6 1143 aaPredicted RBP14.1□□□□□ -0.15
SS18-210ENST00000578700 QRICH2Q9H0J4 1663 aa14.1□□□□□ -0.15
SS18-210ENST00000578700 USP6P35125 1406 aa14.09□□□□□ -0.15
SS18-210ENST00000578700 ZNF784Q8NCA9 323 aaPredicted RBP14.09□□□□□ -0.15
SS18-210ENST00000578700 CARD10Q9BWT7 1032 aa14.09□□□□□ -0.15
SS18-210ENST00000578700 PIK3C2AO00443 1686 aa14.08□□□□□ -0.16
SS18-210ENST00000578700 ARHGEF25Q86VW2 580 aa14.08□□□□□ -0.16
SS18-210ENST00000578700 KCNH5Q8NCM2 988 aa14.08□□□□□ -0.16
SS18-210ENST00000578700 SYT17Q9BSW7 474 aa14.08□□□□□ -0.16
SS18-210ENST00000578700 BCL9O00512 1426 aa14.07□□□□□ -0.16
SS18-210ENST00000578700 GOLGB1Q14789 3259 aaKnown RBP14.07□□□□□ -0.16
SS18-210ENST00000578700 TTC21BQ7Z4L5 1316 aa14.07□□□□□ -0.16
SS18-210ENST00000578700 EVC2Q86UK5 1308 aa14.07□□□□□ -0.16
SS18-210ENST00000578700 MYOM1P52179 1685 aa14.07□□□□□ -0.16
SS18-210ENST00000578700 HSPA5P11021 654 aaKnown RBP14.06□□□□□ -0.16
SS18-210ENST00000578700 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
SS18-210ENST00000578700 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
SS18-210ENST00000578700 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
SS18-210ENST00000578700 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
SS18-210ENST00000578700 ARXQ96QS3 562 aa14.04□□□□□ -0.16
SS18-210ENST00000578700 CARD11Q9BXL7 1154 aa14.04□□□□□ -0.16
SS18-210ENST00000578700 NLRP2Q9NX02 1062 aa14.04□□□□□ -0.16
SS18-210ENST00000578700 CPSF1Q10570 1443 aaKnown RBP14.04□□□□□ -0.16
SS18-210ENST00000578700 KAT6BQ8WYB5 2073 aa14.03□□□□□ -0.16
SS18-210ENST00000578700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.03□□□□□ -0.16
SS18-210ENST00000578700 ROCK2O75116 1388 aaKnown RBP14.02□□□□□ -0.17
SS18-210ENST00000578700 GPR162Q16538 588 aa14.02□□□□□ -0.17
SS18-210ENST00000578700 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
SS18-210ENST00000578700 TRPM1Q7Z4N2 1603 aa14.01□□□□□ -0.17
SS18-210ENST00000578700 TTC21AQ8NDW8 1320 aa14.01□□□□□ -0.17
SS18-210ENST00000578700 NHSQ6T4R5 1651 aa14.01□□□□□ -0.17
SS18-210ENST00000578700 USP47Q96K76 1375 aa14□□□□□ -0.17
SS18-210ENST00000578700 CCDC7Q96M83 1385 aa14□□□□□ -0.17
SS18-210ENST00000578700 C1QTNF8P60827 252 aa14□□□□□ -0.17
SS18-210ENST00000578700 SGIP1Q9BQI5 828 aa14□□□□□ -0.17
SS18-210ENST00000578700 CEP350Q5VT06 3117 aa14□□□□□ -0.17
SS18-210ENST00000578700 ABCC6O95255 1503 aa14□□□□□ -0.17
SS18-210ENST00000578700 KTN1Q86UP2 1357 aaKnown RBP13.99□□□□□ -0.17
SS18-210ENST00000578700 IL2RBP14784 551 aa13.99□□□□□ -0.17
SS18-210ENST00000578700 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
SS18-210ENST00000578700 ZNF827Q17R98 1081 aa13.98□□□□□ -0.17
SS18-210ENST00000578700 DDX54Q8TDD1 881 aaKnown RBP13.98□□□□□ -0.17
SS18-210ENST00000578700 TMC1Q8TDI8 760 aa13.98□□□□□ -0.17
SS18-210ENST00000578700 TNS2Q63HR2 1409 aa13.98□□□□□ -0.17
SS18-210ENST00000578700 NFAT5O94916 1531 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 NME9Q86XW9 330 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 ANKRD24Q8TF21 1146 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 LTV1Q96GA3 475 aaPredicted RBP13.97□□□□□ -0.17
SS18-210ENST00000578700 LRRC4BQ9NT99 713 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 PAPPAQ13219 1627 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 BTAF1O14981 1849 aa13.97□□□□□ -0.17
SS18-210ENST00000578700 MON2Q7Z3U7 1717 aa13.96□□□□□ -0.17
SS18-210ENST00000578700 KCNQ4P56696 695 aa13.96□□□□□ -0.17
SS18-210ENST00000578700 MIER1Q8N108 512 aa13.96□□□□□ -0.17
SS18-210ENST00000578700 LTN1O94822 1766 aa13.96□□□□□ -0.18
SS18-210ENST00000578700 USP54Q70EL1 1684 aa13.95□□□□□ -0.18
SS18-210ENST00000578700 POLD1P28340 1107 aa13.95□□□□□ -0.18
SS18-210ENST00000578700 SYTL4Q96C24 671 aaPredicted RBP13.95□□□□□ -0.18
SS18-210ENST00000578700 QSER1Q2KHR3 1735 aa13.95□□□□□ -0.18
SS18-210ENST00000578700 ERBB3P21860 1342 aa13.94□□□□□ -0.18
SS18-210ENST00000578700 TFCP2L1Q9NZI6 479 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms