RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 IL13P35225 146 aa32.07■■■□□ 2.72
ATPAF1-213ENST00000574428 HAP1P54257 671 aaPredicted RBP32.07■■■□□ 2.72
ATPAF1-213ENST00000574428 EIF4A2Q14240 407 aaKnown RBP32.06■■■□□ 2.72
ATPAF1-213ENST00000574428 IP6K1Q92551 441 aa32.06■■■□□ 2.72
ATPAF1-213ENST00000574428 KIAA0232Q92628 1395 aa32.04■■■□□ 2.72
ATPAF1-213ENST00000574428 U2AF1L5P0DN76 240 aaPredicted RBP32.04■■■□□ 2.72
ATPAF1-213ENST00000574428 U2AF1Q01081 240 aaKnown RBP eCLIP32.04■■■□□ 2.72
ATPAF1-213ENST00000574428 BLMP54132 1417 aaPredicted RBP32.03■■■□□ 2.72
ATPAF1-213ENST00000574428 CPDO75976 1380 aa32.02■■■□□ 2.72
ATPAF1-213ENST00000574428 CENPBP07199 599 aaPredicted RBP32.01■■■□□ 2.71
ATPAF1-213ENST00000574428 HNRNPUQ00839 825 aaKnown RBP eCLIP32■■■□□ 2.71
ATPAF1-213ENST00000574428 CHRNA2Q15822 529 aa32■■■□□ 2.71
ATPAF1-213ENST00000574428 LTV1Q96GA3 475 aaPredicted RBP31.99■■■□□ 2.71
ATPAF1-213ENST00000574428 SENP3-EIF4A1A0A087X0R7 540 aa31.99■■■□□ 2.71
ATPAF1-213ENST00000574428 CCDC146Q8IYE0 955 aa31.99■■■□□ 2.71
ATPAF1-213ENST00000574428 COL18A1P39060 1754 aa31.98■■■□□ 2.71
ATPAF1-213ENST00000574428 AXIN2Q9Y2T1 843 aa31.98■■■□□ 2.71
ATPAF1-213ENST00000574428 PRDM11Q9NQV5 511 aa31.96■■■□□ 2.71
ATPAF1-213ENST00000574428 RGPD1P0DJD0 1748 aa31.96■■■□□ 2.71
ATPAF1-213ENST00000574428 RGPD5Q99666 1765 aa31.96■■■□□ 2.71
ATPAF1-213ENST00000574428 ABCC6O95255 1503 aa31.94■■■□□ 2.7
ATPAF1-213ENST00000574428 HSPA1LP34931 641 aa31.94■■■□□ 2.7
ATPAF1-213ENST00000574428 HMOX1P09601 288 aa31.94■■■□□ 2.7
ATPAF1-213ENST00000574428 JCADQ9P266 1359 aa31.92■■■□□ 2.7
ATPAF1-213ENST00000574428 ANKRD24Q8TF21 1146 aa31.91■■■□□ 2.7
ATPAF1-213ENST00000574428 EYA1Q99502 592 aa31.9■■■□□ 2.7
ATPAF1-213ENST00000574428 LMO7Q8WWI1 1683 aa31.9■■■□□ 2.7
ATPAF1-213ENST00000574428 AEBP1Q8IUX7 1158 aa31.89■■■□□ 2.7
ATPAF1-213ENST00000574428 RSPH6AQ9H0K4 717 aa31.89■■■□□ 2.69
ATPAF1-213ENST00000574428 NUTM2BA6NNL0 878 aaPredicted RBP31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 NUTM2EB1AL46 878 aaPredicted RBP31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 SULT6B1Q6IMI4 303 aa31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 NUTM2AQ8IVF1 878 aaPredicted RBP31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 RUNDC1Q96C34 613 aa31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 IGSF1Q8N6C5 1336 aa31.88■■■□□ 2.69
ATPAF1-213ENST00000574428 FAM83GA6ND36 823 aa31.87■■■□□ 2.69
ATPAF1-213ENST00000574428 FCHSD2O94868 740 aa31.87■■■□□ 2.69
ATPAF1-213ENST00000574428 ERBB3P21860 1342 aa31.87■■■□□ 2.69
ATPAF1-213ENST00000574428 CAMTA1Q9Y6Y1 1673 aa31.86■■■□□ 2.69
ATPAF1-213ENST00000574428 PRKAR2BP31323 418 aa31.86■■■□□ 2.69
ATPAF1-213ENST00000574428 PLEKHF1Q96S99 279 aa31.86■■■□□ 2.69
ATPAF1-213ENST00000574428 RGPD2P0DJD1 1756 aa31.86■■■□□ 2.69
ATPAF1-213ENST00000574428 ADAMTS2O95450 1211 aa31.84■■■□□ 2.69
ATPAF1-213ENST00000574428 NBPF6Q5VWK0 638 aa31.84■■■□□ 2.69
ATPAF1-213ENST00000574428 NBPF4Q96M43 638 aa31.84■■■□□ 2.69
ATPAF1-213ENST00000574428 APAF1O14727 1248 aa31.83■■■□□ 2.69
ATPAF1-213ENST00000574428 USHBP1Q8N6Y0 703 aa31.83■■■□□ 2.69
ATPAF1-213ENST00000574428 SALL2Q9Y467 1007 aaPredicted RBP31.83■■■□□ 2.69
ATPAF1-213ENST00000574428 COL14A1Q05707 1796 aaKnown RBP31.83■■■□□ 2.69
ATPAF1-213ENST00000574428 PNNQ9H307 717 aaKnown RBP31.81■■■□□ 2.68
ATPAF1-213ENST00000574428 KDRP35968 1356 aa31.81■■■□□ 2.68
ATPAF1-213ENST00000574428 COL5A2P05997 1499 aaPredicted RBP31.8■■■□□ 2.68
ATPAF1-213ENST00000574428 MAPK8IP3Q9UPT6 1336 aa31.8■■■□□ 2.68
ATPAF1-213ENST00000574428 CSB-PGBD3P0DP91 1061 aa31.79■■■□□ 2.68
ATPAF1-213ENST00000574428 TCP11L2Q8N4U5 519 aa31.79■■■□□ 2.68
ATPAF1-213ENST00000574428 ZBED9Q6R2W3 1325 aa31.79■■■□□ 2.68
ATPAF1-213ENST00000574428 FAM208AQ9UK61 1670 aaKnown RBP31.77■■■□□ 2.68
ATPAF1-213ENST00000574428 PHACTR3Q96KR7 559 aa31.77■■■□□ 2.68
ATPAF1-213ENST00000574428 NLRP2Q9NX02 1062 aa31.76■■■□□ 2.68
ATPAF1-213ENST00000574428 BTG4Q9NY30 223 aa31.76■■■□□ 2.68
ATPAF1-213ENST00000574428 RRP7AQ9Y3A4 280 aaKnown RBP31.76■■■□□ 2.68
ATPAF1-213ENST00000574428 SPATA31A6Q5VVP1 1343 aa31.76■■■□□ 2.67
ATPAF1-213ENST00000574428 PLCH1Q4KWH8 1693 aa31.75■■■□□ 2.67
ATPAF1-213ENST00000574428 NCAPD2Q15021 1401 aa31.74■■■□□ 2.67
ATPAF1-213ENST00000574428 NEFMP07197 916 aa31.74■■■□□ 2.67
ATPAF1-213ENST00000574428 STRN4Q9NRL3 753 aa31.74■■■□□ 2.67
ATPAF1-213ENST00000574428 LRP6O75581 1613 aa31.74■■■□□ 2.67
ATPAF1-213ENST00000574428 WDR17Q8IZU2 1322 aa31.73■■■□□ 2.67
ATPAF1-213ENST00000574428 NEUROD2Q15784 382 aa31.73■■■□□ 2.67
ATPAF1-213ENST00000574428 EVA1CP58658 441 aa31.71■■■□□ 2.67
ATPAF1-213ENST00000574428 TMPOP42166 694 aaKnown RBP31.69■■■□□ 2.66
ATPAF1-213ENST00000574428 LARP1Q6PKG0 1096 aaKnown RBP31.68■■■□□ 2.66
ATPAF1-213ENST00000574428 TOM1L2Q6ZVM7 507 aa31.68■■■□□ 2.66
ATPAF1-213ENST00000574428 NFE2L2Q16236 605 aa31.66■■■□□ 2.66
ATPAF1-213ENST00000574428 C8orf37Q96NL8 207 aa31.65■■■□□ 2.66
ATPAF1-213ENST00000574428 NRAPQ86VF7 1730 aa31.65■■■□□ 2.66
ATPAF1-213ENST00000574428 RIPK4P57078 832 aa31.63■■■□□ 2.65
ATPAF1-213ENST00000574428 NGEFQ8N5V2 710 aa31.63■■■□□ 2.65
ATPAF1-213ENST00000574428 SLIT2O94813 1529 aa31.63■■■□□ 2.65
ATPAF1-213ENST00000574428 CRB1P82279 1406 aa31.63■■■□□ 2.65
ATPAF1-213ENST00000574428 NWD2Q9ULI1 1742 aa31.63■■■□□ 2.65
ATPAF1-213ENST00000574428 ZNF521Q96K83 1311 aa31.62■■■□□ 2.65
ATPAF1-213ENST00000574428 CARD10Q9BWT7 1032 aa31.61■■■□□ 2.65
ATPAF1-213ENST00000574428 MTHFSDQ2M296 383 aaKnown RBP31.61■■■□□ 2.65
ATPAF1-213ENST00000574428 FBXO41Q8TF61 875 aa31.61■■■□□ 2.65
ATPAF1-213ENST00000574428 NGLY1Q96IV0 654 aa31.61■■■□□ 2.65
ATPAF1-213ENST00000574428 WWC1Q8IX03 1113 aa31.6■■■□□ 2.65
ATPAF1-213ENST00000574428 MEGF6O75095 1541 aa31.6■■■□□ 2.65
ATPAF1-213ENST00000574428 MEX3CQ5U5Q3 659 aaKnown RBP31.59■■■□□ 2.65
ATPAF1-213ENST00000574428 PHF23Q9BUL5 403 aaPredicted RBP31.59■■■□□ 2.65
ATPAF1-213ENST00000574428 TRIM35Q9UPQ4 493 aa31.59■■■□□ 2.65
ATPAF1-213ENST00000574428 DLG5Q8TDM6 1919 aa31.59■■■□□ 2.65
ATPAF1-213ENST00000574428 CCDC27Q2M243 656 aa31.58■■■□□ 2.65
ATPAF1-213ENST00000574428 RAPGEF4Q8WZA2 1011 aa31.58■■■□□ 2.65
ATPAF1-213ENST00000574428 NCBP3Q53F19 620 aaKnown RBP31.58■■■□□ 2.65
ATPAF1-213ENST00000574428 USP35Q9P2H5 1018 aa31.58■■■□□ 2.65
ATPAF1-213ENST00000574428 GAS2L2Q8NHY3 880 aa31.56■■■□□ 2.64
ATPAF1-213ENST00000574428 TATP17735 454 aaPredicted RBP31.55■■■□□ 2.64
ATPAF1-213ENST00000574428 CDCA7LQ96GN5 454 aa31.53■■■□□ 2.64
ATPAF1-213ENST00000574428 BCL9LQ86UU0 1499 aa31.53■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms