RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 MPHOSPH9Q99550 1183 aa19.39■□□□□ 0.69
CCDC40-208ENST00000572270 USP19O94966 1318 aa19.39■□□□□ 0.69
CCDC40-208ENST00000572270 BCL9O00512 1426 aa19.39■□□□□ 0.69
CCDC40-208ENST00000572270 ZBTB7CA1YPR0 619 aa19.38■□□□□ 0.69
CCDC40-208ENST00000572270 POLR3AO14802 1390 aaPredicted RBP19.38■□□□□ 0.69
CCDC40-208ENST00000572270 AATKQ6ZMQ8 1374 aa19.38■□□□□ 0.69
CCDC40-208ENST00000572270 KLHL34Q8N239 644 aa19.38■□□□□ 0.69
CCDC40-208ENST00000572270 GOLGB1Q14789 3259 aaKnown RBP19.37■□□□□ 0.69
CCDC40-208ENST00000572270 ACEP12821 1306 aa19.37■□□□□ 0.69
CCDC40-208ENST00000572270 TOM1L2Q6ZVM7 507 aa19.37■□□□□ 0.69
CCDC40-208ENST00000572270 NLRP13Q86W25 1043 aa19.37■□□□□ 0.69
CCDC40-208ENST00000572270 TOPAZ1Q8N9V7 1692 aa19.36■□□□□ 0.69
CCDC40-208ENST00000572270 GCP02774 474 aa19.36■□□□□ 0.69
CCDC40-208ENST00000572270 MARCH10Q8NA82 808 aaPredicted RBP19.36■□□□□ 0.69
CCDC40-208ENST00000572270 CDCA7Q9BWT1 371 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-208ENST00000572270 ARHGEF28Q8N1W1 1705 aaKnown RBP19.34■□□□□ 0.69
CCDC40-208ENST00000572270 POLD1P28340 1107 aa19.31■□□□□ 0.68
CCDC40-208ENST00000572270 CCDC61Q9Y6R9 512 aa19.31■□□□□ 0.68
CCDC40-208ENST00000572270 PAPPAQ13219 1627 aa19.31■□□□□ 0.68
CCDC40-208ENST00000572270 HSPA6P17066 643 aa19.3■□□□□ 0.68
CCDC40-208ENST00000572270 CDK19Q9BWU1 502 aa19.3■□□□□ 0.68
CCDC40-208ENST00000572270 NHSQ6T4R5 1651 aa19.3■□□□□ 0.68
CCDC40-208ENST00000572270 WDR17Q8IZU2 1322 aa19.28■□□□□ 0.68
CCDC40-208ENST00000572270 PLEKHG3A1L390 1219 aa19.28■□□□□ 0.68
CCDC40-208ENST00000572270 GRIN3BO60391 1043 aa19.28■□□□□ 0.68
CCDC40-208ENST00000572270 ATP10DQ9P241 1426 aa19.26■□□□□ 0.67
CCDC40-208ENST00000572270 EXOC5O00471 708 aa19.26■□□□□ 0.67
CCDC40-208ENST00000572270 SLC16A10Q8TF71 515 aa19.26■□□□□ 0.67
CCDC40-208ENST00000572270 GPBP1L1Q9HC44 474 aaPredicted RBP19.26■□□□□ 0.67
CCDC40-208ENST00000572270 ZNF827Q17R98 1081 aa19.24■□□□□ 0.67
CCDC40-208ENST00000572270 KDM2AQ9Y2K7 1162 aa19.24■□□□□ 0.67
CCDC40-208ENST00000572270 QSER1Q2KHR3 1735 aa19.24■□□□□ 0.67
CCDC40-208ENST00000572270 SLIT3O75094 1523 aa19.24■□□□□ 0.67
CCDC40-208ENST00000572270 COL18A1P39060 1754 aa19.24■□□□□ 0.67
CCDC40-208ENST00000572270 BRD4O60885 1362 aaPredicted RBP19.23■□□□□ 0.67
CCDC40-208ENST00000572270 CSB-PGBD3P0DP91 1061 aa19.23■□□□□ 0.67
CCDC40-208ENST00000572270 NLRP6P59044 892 aa19.23■□□□□ 0.67
CCDC40-208ENST00000572270 NLGN2Q8NFZ4 835 aa19.23■□□□□ 0.67
CCDC40-208ENST00000572270 TNS2Q63HR2 1409 aa19.23■□□□□ 0.67
CCDC40-208ENST00000572270 COL24A1Q17RW2 1714 aa19.22■□□□□ 0.67
CCDC40-208ENST00000572270 ACSBG1Q96GR2 724 aa19.22■□□□□ 0.67
CCDC40-208ENST00000572270 CARD10Q9BWT7 1032 aa19.22■□□□□ 0.67
CCDC40-208ENST00000572270 BTAF1O14981 1849 aa19.21■□□□□ 0.67
CCDC40-208ENST00000572270 PPIP5K1Q6PFW1 1433 aa19.21■□□□□ 0.67
CCDC40-208ENST00000572270 CPSF1Q10570 1443 aaKnown RBP19.2■□□□□ 0.66
CCDC40-208ENST00000572270 RGPD5Q99666 1765 aa19.2■□□□□ 0.66
CCDC40-208ENST00000572270 YBX3P16989 372 aaKnown RBP eCLIP19.2■□□□□ 0.66
CCDC40-208ENST00000572270 AXIN2Q9Y2T1 843 aa19.2■□□□□ 0.66
CCDC40-208ENST00000572270 DCAF11Q8TEB1 546 aa19.19■□□□□ 0.66
CCDC40-208ENST00000572270 CCDC7Q96M83 1385 aa19.19■□□□□ 0.66
CCDC40-208ENST00000572270 USP6P35125 1406 aa19.18■□□□□ 0.66
CCDC40-208ENST00000572270 TRPM1Q7Z4N2 1603 aa19.18■□□□□ 0.66
CCDC40-208ENST00000572270 ABCC6O95255 1503 aa19.17■□□□□ 0.66
CCDC40-208ENST00000572270 SRPK2P78362 688 aaKnown RBP19.17■□□□□ 0.66
CCDC40-208ENST00000572270 ZNF526Q8TF50 670 aaPredicted RBP19.17■□□□□ 0.66
CCDC40-208ENST00000572270 STAC3Q96MF2 364 aa19.16■□□□□ 0.66
CCDC40-208ENST00000572270 AKT1S1Q96B36 256 aa19.15■□□□□ 0.66
CCDC40-208ENST00000572270 LRRC4BQ9NT99 713 aa19.15■□□□□ 0.66
CCDC40-208ENST00000572270 TFCP2L1Q9NZI6 479 aa19.15■□□□□ 0.66
CCDC40-208ENST00000572270 PIK3C2AO00443 1686 aa19.14■□□□□ 0.66
CCDC40-208ENST00000572270 TUBGCP6Q96RT7 1819 aa19.14■□□□□ 0.65
CCDC40-208ENST00000572270 KAT6BQ8WYB5 2073 aa19.14■□□□□ 0.65
CCDC40-208ENST00000572270 PNPLA7Q6ZV29 1317 aa19.14■□□□□ 0.65
CCDC40-208ENST00000572270 QRICH2Q9H0J4 1663 aa19.14■□□□□ 0.65
CCDC40-208ENST00000572270 SLC27A3Q5K4L6 730 aa19.13■□□□□ 0.65
CCDC40-208ENST00000572270 ADCY9O60503 1353 aa19.12■□□□□ 0.65
CCDC40-208ENST00000572270 ARHGEF25Q86VW2 580 aa19.12■□□□□ 0.65
CCDC40-208ENST00000572270 KCNH5Q8NCM2 988 aa19.12■□□□□ 0.65
CCDC40-208ENST00000572270 APLP1P51693 650 aa19.11■□□□□ 0.65
CCDC40-208ENST00000572270 SOX12O15370 315 aa19.1■□□□□ 0.65
CCDC40-208ENST00000572270 CABP2Q9NPB3 220 aa19.09■□□□□ 0.65
CCDC40-208ENST00000572270 MSH5O43196 834 aa19.07■□□□□ 0.64
CCDC40-208ENST00000572270 CAPN15O75808 1086 aa19.06■□□□□ 0.64
CCDC40-208ENST00000572270 IL2RBP14784 551 aa19.06■□□□□ 0.64
CCDC40-208ENST00000572270 CABP1Q9NZU7 370 aa19.06■□□□□ 0.64
CCDC40-208ENST00000572270 NLRP2Q9NX02 1062 aa19.04■□□□□ 0.64
CCDC40-208ENST00000572270 KIAA1210Q9ULL0 1709 aa19.03■□□□□ 0.64
CCDC40-208ENST00000572270 KIF3CO14782 793 aa19.03■□□□□ 0.64
CCDC40-208ENST00000572270 NFAT5O94916 1531 aa19.03■□□□□ 0.64
CCDC40-208ENST00000572270 CD2APQ9Y5K6 639 aa19.02■□□□□ 0.64
CCDC40-208ENST00000572270 CENPJQ9HC77 1338 aaPredicted RBP19.01■□□□□ 0.63
CCDC40-208ENST00000572270 LY75O60449 1722 aa19.01■□□□□ 0.63
CCDC40-208ENST00000572270 KCNQ4P56696 695 aa19.01■□□□□ 0.63
CCDC40-208ENST00000572270 MSL1Q68DK7 614 aa19■□□□□ 0.63
CCDC40-208ENST00000572270 DNAJC5GQ8N7S2 189 aa19■□□□□ 0.63
CCDC40-208ENST00000572270 ERBB3P21860 1342 aa19■□□□□ 0.63
CCDC40-208ENST00000572270 TTC21BQ7Z4L5 1316 aa19■□□□□ 0.63
CCDC40-208ENST00000572270 SYTL4Q96C24 671 aaPredicted RBP18.99■□□□□ 0.63
CCDC40-208ENST00000572270 TTC21AQ8NDW8 1320 aa18.99■□□□□ 0.63
CCDC40-208ENST00000572270 COL13A1Q5TAT6 717 aaPredicted RBP18.98■□□□□ 0.63
CCDC40-208ENST00000572270 COL23A1Q86Y22 540 aaPredicted RBP18.97■□□□□ 0.63
CCDC40-208ENST00000572270 ZNF692Q9BU19 519 aaPredicted RBP18.97■□□□□ 0.63
CCDC40-208ENST00000572270 WDR90Q96KV7 1748 aa18.97■□□□□ 0.63
CCDC40-208ENST00000572270 TOMM70O94826 608 aa18.96■□□□□ 0.63
CCDC40-208ENST00000572270 TNS4Q8IZW8 715 aa18.96■□□□□ 0.63
CCDC40-208ENST00000572270 DDX54Q8TDD1 881 aaKnown RBP18.96■□□□□ 0.63
CCDC40-208ENST00000572270 CCNL1Q9UK58 526 aaPredicted RBP18.96■□□□□ 0.63
CCDC40-208ENST00000572270 DOT1LQ8TEK3 1739 aa18.96■□□□□ 0.63
CCDC40-208ENST00000572270 PRELPP51888 382 aa18.95■□□□□ 0.62
CCDC40-208ENST00000572270 LTN1O94822 1766 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms