RNA–Protein interactions for RNA: ENST00000569794.1

CHD9-220, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-220ENST00000569794 FKBPLQ9UIM3 349 aa12.02□□□□□ -0.49
CHD9-220ENST00000569794 TTLL8A6PVC2 850 aa12.01□□□□□ -0.49
CHD9-220ENST00000569794 Q6ZVU0 165 aa12.01□□□□□ -0.49
CHD9-220ENST00000569794 PGPEP1Q9NXJ5 209 aa12.01□□□□□ -0.49
CHD9-220ENST00000569794 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12□□□□□ -0.49
CHD9-220ENST00000569794 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
CHD9-220ENST00000569794 CBLBQ13191 982 aa11.99□□□□□ -0.49
CHD9-220ENST00000569794 SKIV2LQ15477 1246 aaKnown RBP11.99□□□□□ -0.49
CHD9-220ENST00000569794 SLC10A4Q96EP9 437 aa11.99□□□□□ -0.49
CHD9-220ENST00000569794 KCTD15Q96SI1 283 aaPredicted RBP11.99□□□□□ -0.49
CHD9-220ENST00000569794 CDV3Q9UKY7 258 aaKnown RBP11.98□□□□□ -0.49
CHD9-220ENST00000569794 ZC3H4Q9UPT8 1303 aaKnown RBP11.97□□□□□ -0.49
CHD9-220ENST00000569794 SPINT1O43278 529 aa11.97□□□□□ -0.49
CHD9-220ENST00000569794 PTSQ03393 145 aa11.97□□□□□ -0.49
CHD9-220ENST00000569794 NR6A1Q15406 480 aa11.97□□□□□ -0.49
CHD9-220ENST00000569794 SH3D19Q5HYK7 790 aa11.97□□□□□ -0.49
CHD9-220ENST00000569794 PROCA1Q8NCQ7 364 aaPredicted RBP11.96□□□□□ -0.49
CHD9-220ENST00000569794 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.96□□□□□ -0.49
CHD9-220ENST00000569794 FIGNL2A6NMB9 653 aa11.95□□□□□ -0.5
CHD9-220ENST00000569794 PPP2R2DQ66LE6 453 aa11.95□□□□□ -0.5
CHD9-220ENST00000569794 ZBTB33Q86T24 672 aa11.95□□□□□ -0.5
CHD9-220ENST00000569794 GPR161Q8N6U8 529 aaKnown RBP11.95□□□□□ -0.5
CHD9-220ENST00000569794 OCSTAMPQ9BR26 566 aa11.95□□□□□ -0.5
CHD9-220ENST00000569794 KRT76Q01546 638 aa11.94□□□□□ -0.5
CHD9-220ENST00000569794 DHX9Q08211 1270 aaKnown RBP11.94□□□□□ -0.5
CHD9-220ENST00000569794 PTK2Q05397 1052 aa11.93□□□□□ -0.5
CHD9-220ENST00000569794 INTS6LQ5JSJ4 861 aaKnown RBP11.93□□□□□ -0.5
CHD9-220ENST00000569794 KDM4CQ9H3R0 1056 aa11.92□□□□□ -0.5
CHD9-220ENST00000569794 GPBP1L1Q9HC44 474 aaPredicted RBP11.92□□□□□ -0.5
CHD9-220ENST00000569794 GPSM3Q9Y4H4 160 aa11.92□□□□□ -0.5
CHD9-220ENST00000569794 DDRGK1Q96HY6 314 aa11.91□□□□□ -0.5
CHD9-220ENST00000569794 FAM117AQ9C073 453 aa11.91□□□□□ -0.5
CHD9-220ENST00000569794 CCDC155Q8N6L0 562 aa11.9□□□□□ -0.5
CHD9-220ENST00000569794 ADAM32Q8TC27 787 aa11.9□□□□□ -0.5
CHD9-220ENST00000569794 AGBL1Q96MI9 1066 aa11.9□□□□□ -0.5
CHD9-220ENST00000569794 AP1G2O75843 785 aa11.89□□□□□ -0.51
CHD9-220ENST00000569794 NANOS1Q8WY41 292 aaKnown RBP11.89□□□□□ -0.51
CHD9-220ENST00000569794 CNTNAP3BQ96NU0 1288 aa11.89□□□□□ -0.51
CHD9-220ENST00000569794 CNTNAP3Q9BZ76 1288 aa11.89□□□□□ -0.51
CHD9-220ENST00000569794 CTSOP43234 321 aaPredicted RBP11.88□□□□□ -0.51
CHD9-220ENST00000569794 ATP1B4Q9UN42 357 aaPredicted RBP11.88□□□□□ -0.51
CHD9-220ENST00000569794 SLC35F4A4IF30 521 aa11.87□□□□□ -0.51
CHD9-220ENST00000569794 RELBQ01201 579 aa11.87□□□□□ -0.51
CHD9-220ENST00000569794 EPS8L1Q8TE68 723 aa11.87□□□□□ -0.51
CHD9-220ENST00000569794 INSM2Q96T92 566 aaPredicted RBP11.87□□□□□ -0.51
CHD9-220ENST00000569794 KCNMA1Q12791 1236 aa11.86□□□□□ -0.51
CHD9-220ENST00000569794 NBPF20Q3BBV1 942 aa11.86□□□□□ -0.51
CHD9-220ENST00000569794 COL25A1Q9BXS0 654 aaPredicted RBP11.86□□□□□ -0.51
CHD9-220ENST00000569794 HMX1Q9NP08 348 aaPredicted RBP11.86□□□□□ -0.51
CHD9-220ENST00000569794 TMPRSS4Q9NRS4 437 aa11.85□□□□□ -0.51
CHD9-220ENST00000569794 ITGA6P23229 1130 aa11.84□□□□□ -0.51
CHD9-220ENST00000569794 GSK3AP49840 483 aa11.84□□□□□ -0.51
CHD9-220ENST00000569794 USP17L8P0C7I0 530 aa11.83□□□□□ -0.52
CHD9-220ENST00000569794 RNFT1Q5M7Z0 435 aa11.83□□□□□ -0.52
CHD9-220ENST00000569794 ZNF784Q8NCA9 323 aaPredicted RBP11.83□□□□□ -0.52
CHD9-220ENST00000569794 PNMA1Q8ND90 353 aa11.83□□□□□ -0.52
CHD9-220ENST00000569794 RNF217Q8TC41 542 aa11.83□□□□□ -0.52
CHD9-220ENST00000569794 POLMQ9NP87 494 aaPredicted RBP11.83□□□□□ -0.52
CHD9-220ENST00000569794 ZNF395Q9H8N7 513 aaPredicted RBP11.82□□□□□ -0.52
CHD9-220ENST00000569794 ADH1AP07327 375 aa11.81□□□□□ -0.52
CHD9-220ENST00000569794 RAB15P59190 212 aa11.81□□□□□ -0.52
CHD9-220ENST00000569794 ERVH48-1M5A8F1 160 aa11.8□□□□□ -0.52
CHD9-220ENST00000569794 LILRA1O75019 489 aa11.8□□□□□ -0.52
CHD9-220ENST00000569794 DZIP3Q86Y13 1208 aaKnown RBP11.8□□□□□ -0.52
CHD9-220ENST00000569794 VWA5B2Q8N398 1253 aa11.8□□□□□ -0.52
CHD9-220ENST00000569794 SENP3-EIF4A1A0A087X0R7 540 aa11.79□□□□□ -0.52
CHD9-220ENST00000569794 ADD1P35611 737 aaKnown RBP11.79□□□□□ -0.52
CHD9-220ENST00000569794 KDF1Q8NAX2 398 aaPredicted RBP11.79□□□□□ -0.52
CHD9-220ENST00000569794 ADAMTS8Q9UP79 889 aa11.79□□□□□ -0.52
CHD9-220ENST00000569794 CDC14CA4D256 554 aa11.78□□□□□ -0.52
CHD9-220ENST00000569794 ESPNB1AK53 854 aa11.78□□□□□ -0.52
CHD9-220ENST00000569794 ZNF385CQ66K41 422 aaPredicted RBP11.78□□□□□ -0.52
CHD9-220ENST00000569794 SV2AQ7L0J3 742 aa11.78□□□□□ -0.52
CHD9-220ENST00000569794 SLURP2P0DP57 97 aa11.77□□□□□ -0.53
CHD9-220ENST00000569794 RFC5P40937 340 aa11.77□□□□□ -0.53
CHD9-220ENST00000569794 FOXD4L5Q5VV16 416 aaPredicted RBP11.77□□□□□ -0.53
CHD9-220ENST00000569794 PTGIRP43119 386 aa11.76□□□□□ -0.53
CHD9-220ENST00000569794 KCTD17Q8N5Z5 321 aa11.76□□□□□ -0.53
CHD9-220ENST00000569794 SVOPQ8N4V2 548 aa11.75□□□□□ -0.53
CHD9-220ENST00000569794 RASSF7Q02833 373 aa11.74□□□□□ -0.53
CHD9-220ENST00000569794 WHAMMQ8TF30 809 aa11.74□□□□□ -0.53
CHD9-220ENST00000569794 TRIM34Q9BYJ4 488 aa11.74□□□□□ -0.53
CHD9-220ENST00000569794 RNF225M0QZC1 329 aaPredicted RBP11.73□□□□□ -0.53
CHD9-220ENST00000569794 SEPT12Q8IYM1 358 aa11.73□□□□□ -0.53
CHD9-220ENST00000569794 TMEM151AQ8N4L1 468 aa11.73□□□□□ -0.53
CHD9-220ENST00000569794 GDF11O95390 407 aa11.71□□□□□ -0.53
CHD9-220ENST00000569794 LYSMD3Q7Z3D4 306 aa11.71□□□□□ -0.53
CHD9-220ENST00000569794 CYLDQ9NQC7 956 aa11.71□□□□□ -0.53
CHD9-220ENST00000569794 ARHGEF15O94989 841 aa11.7□□□□□ -0.54
CHD9-220ENST00000569794 LOC100996750A0A140TA64 210 aa11.69□□□□□ -0.54
CHD9-220ENST00000569794 KRTAP4-6Q9BYQ5 205 aa11.69□□□□□ -0.54
CHD9-220ENST00000569794 GOPCQ9HD26 462 aa11.69□□□□□ -0.54
CHD9-220ENST00000569794 CUEDC1Q9NWM3 386 aaPredicted RBP11.69□□□□□ -0.54
CHD9-220ENST00000569794 RNF144AP50876 292 aaPredicted RBP11.68□□□□□ -0.54
CHD9-220ENST00000569794 TMEM259Q4ZIN3 620 aa11.67□□□□□ -0.54
CHD9-220ENST00000569794 TRIM52Q96A61 297 aa11.67□□□□□ -0.54
CHD9-220ENST00000569794 ZBBXA8MT70 800 aa11.66□□□□□ -0.54
CHD9-220ENST00000569794 GIGYF1O75420 1035 aaPredicted RBP11.66□□□□□ -0.54
CHD9-220ENST00000569794 ADAMTS2O95450 1211 aa11.66□□□□□ -0.54
CHD9-220ENST00000569794 PRICKLE2Q7Z3G6 844 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms