RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 CHRNA2Q15822 529 aa13.63□□□□□ -0.23
CLN6-209ENST00000569336 NME9Q86XW9 330 aa13.62□□□□□ -0.23
CLN6-209ENST00000569336 SPATA31A5Q5VU36 1347 aa13.62□□□□□ -0.23
CLN6-209ENST00000569336 SPATA31A7Q8IWB4 1347 aa13.62□□□□□ -0.23
CLN6-209ENST00000569336 TNS1Q9HBL0 1735 aaKnown RBP13.61□□□□□ -0.23
CLN6-209ENST00000569336 CRB1P82279 1406 aa13.61□□□□□ -0.23
CLN6-209ENST00000569336 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
CLN6-209ENST00000569336 ZBTB7CA1YPR0 619 aa13.6□□□□□ -0.23
CLN6-209ENST00000569336 EVA1CP58658 441 aa13.6□□□□□ -0.23
CLN6-209ENST00000569336 COG3Q96JB2 828 aa13.6□□□□□ -0.23
CLN6-209ENST00000569336 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
CLN6-209ENST00000569336 BLMP54132 1417 aaPredicted RBP13.59□□□□□ -0.23
CLN6-209ENST00000569336 SOX12O15370 315 aa13.59□□□□□ -0.23
CLN6-209ENST00000569336 SPATA31A1Q5TZJ5 1347 aa13.59□□□□□ -0.23
CLN6-209ENST00000569336 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
CLN6-209ENST00000569336 A0A0G2JS52 829 aa13.58□□□□□ -0.24
CLN6-209ENST00000569336 MYT1Q01538 1121 aa13.58□□□□□ -0.24
CLN6-209ENST00000569336 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
CLN6-209ENST00000569336 POLR3GLQ9BT43 218 aa13.58□□□□□ -0.24
CLN6-209ENST00000569336 ONECUT3O60422 494 aaPredicted RBP13.57□□□□□ -0.24
CLN6-209ENST00000569336 WDR17Q8IZU2 1322 aa13.57□□□□□ -0.24
CLN6-209ENST00000569336 RTL1A6NKG5 1358 aa13.57□□□□□ -0.24
CLN6-209ENST00000569336 RGPD3A6NKT7 1758 aaPredicted RBP13.56□□□□□ -0.24
CLN6-209ENST00000569336 RGPD4Q7Z3J3 1758 aa13.56□□□□□ -0.24
CLN6-209ENST00000569336 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
CLN6-209ENST00000569336 SEPT12Q8IYM1 358 aa13.56□□□□□ -0.24
CLN6-209ENST00000569336 THRAP3Q9Y2W1 955 aaKnown RBP13.56□□□□□ -0.24
CLN6-209ENST00000569336 CGNL1Q0VF96 1302 aa13.56□□□□□ -0.24
CLN6-209ENST00000569336 SHANK3Q9BYB0 1731 aa13.55□□□□□ -0.24
CLN6-209ENST00000569336 LARP1Q6PKG0 1096 aaKnown RBP13.54□□□□□ -0.24
CLN6-209ENST00000569336 BARGINQ6ZT62 677 aa13.54□□□□□ -0.24
CLN6-209ENST00000569336 VIRMAQ69YN4 1812 aaKnown RBP13.54□□□□□ -0.24
CLN6-209ENST00000569336 NSD2O96028 1365 aa13.54□□□□□ -0.24
CLN6-209ENST00000569336 FYB1O15117 783 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 TOM1L2Q6ZVM7 507 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 KRT27Q7Z3Y8 459 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 TCP11L2Q8N4U5 519 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 USP35Q9P2H5 1018 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 KIF24Q5T7B8 1368 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 CCDC7Q96M83 1385 aa13.53□□□□□ -0.24
CLN6-209ENST00000569336 SMG6Q86US8 1419 aaKnown RBP13.53□□□□□ -0.24
CLN6-209ENST00000569336 CSB-PGBD3P0DP91 1061 aa13.52□□□□□ -0.25
CLN6-209ENST00000569336 CCDC125Q86Z20 511 aa13.52□□□□□ -0.25
CLN6-209ENST00000569336 GGNBP2Q9H3C7 697 aa13.52□□□□□ -0.25
CLN6-209ENST00000569336 ERBB3P21860 1342 aa13.52□□□□□ -0.25
CLN6-209ENST00000569336 KIF7Q2M1P5 1343 aa13.51□□□□□ -0.25
CLN6-209ENST00000569336 CARD14Q9BXL6 1004 aa13.51□□□□□ -0.25
CLN6-209ENST00000569336 AXIN2Q9Y2T1 843 aa13.51□□□□□ -0.25
CLN6-209ENST00000569336 PKD1L3Q7Z443 1732 aa13.5□□□□□ -0.25
CLN6-209ENST00000569336 NHSQ6T4R5 1651 aa13.5□□□□□ -0.25
CLN6-209ENST00000569336 FLT4P35916 1363 aa13.5□□□□□ -0.25
CLN6-209ENST00000569336 CDCA7Q9BWT1 371 aaPredicted RBP13.5□□□□□ -0.25
CLN6-209ENST00000569336 RREB1Q92766 1687 aa13.5□□□□□ -0.25
CLN6-209ENST00000569336 TNS2Q63HR2 1409 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 MAP3K19Q56UN5 1328 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 AMPHP49418 695 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 IP6K1Q92551 441 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 CARD10Q9BWT7 1032 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 DOT1LQ8TEK3 1739 aa13.49□□□□□ -0.25
CLN6-209ENST00000569336 OVOS2A0A0G2JMS6 1433 aa13.48□□□□□ -0.25
CLN6-209ENST00000569336 DISP2A7MBM2 1401 aa13.48□□□□□ -0.25
CLN6-209ENST00000569336 PANK3Q9H999 370 aa13.48□□□□□ -0.25
CLN6-209ENST00000569336 BTAF1O14981 1849 aa13.48□□□□□ -0.25
CLN6-209ENST00000569336 C11orf95C9JLR9 678 aaPredicted RBP13.47□□□□□ -0.25
CLN6-209ENST00000569336 HOXC9P31274 260 aa13.47□□□□□ -0.25
CLN6-209ENST00000569336 ANKRD24Q8TF21 1146 aa13.47□□□□□ -0.25
CLN6-209ENST00000569336 ITGB4P16144 1822 aa13.46□□□□□ -0.25
CLN6-209ENST00000569336 PDE3BQ13370 1112 aa13.46□□□□□ -0.25
CLN6-209ENST00000569336 SF3B2Q13435 895 aaKnown RBP13.46□□□□□ -0.25
CLN6-209ENST00000569336 KNSTRNQ9Y448 316 aa13.46□□□□□ -0.25
CLN6-209ENST00000569336 NUP188Q5SRE5 1749 aa13.46□□□□□ -0.25
CLN6-209ENST00000569336 INSRP06213 1382 aa13.45□□□□□ -0.26
CLN6-209ENST00000569336 NLRP2Q9NX02 1062 aa13.45□□□□□ -0.26
CLN6-209ENST00000569336 RRS1Q15050 365 aaKnown RBP13.44□□□□□ -0.26
CLN6-209ENST00000569336 DDB1Q16531 1140 aa13.44□□□□□ -0.26
CLN6-209ENST00000569336 WASHC2AQ641Q2 1341 aa13.43□□□□□ -0.26
CLN6-209ENST00000569336 FAM196AQ6ZSG2 479 aa13.43□□□□□ -0.26
CLN6-209ENST00000569336 IL2RBP14784 551 aa13.42□□□□□ -0.26
CLN6-209ENST00000569336 DEFB132Q7Z7B7 95 aa13.42□□□□□ -0.26
CLN6-209ENST00000569336 LTV1Q96GA3 475 aaPredicted RBP13.42□□□□□ -0.26
CLN6-209ENST00000569336 BCL9O00512 1426 aa13.41□□□□□ -0.26
CLN6-209ENST00000569336 PSDA5PKW4 1024 aaPredicted RBP13.41□□□□□ -0.26
CLN6-209ENST00000569336 YY1P25490 414 aa13.41□□□□□ -0.26
CLN6-209ENST00000569336 FBLN1P23142 703 aa13.4□□□□□ -0.26
CLN6-209ENST00000569336 MORC1Q86VD1 984 aa13.4□□□□□ -0.26
CLN6-209ENST00000569336 EMILIN1Q9Y6C2 1016 aa13.4□□□□□ -0.26
CLN6-209ENST00000569336 NPC1L1Q9UHC9 1359 aa13.4□□□□□ -0.26
CLN6-209ENST00000569336 NCAPD2Q15021 1401 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 MEGF6O75095 1541 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 LY75O60449 1722 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 EXOC5O00471 708 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 PPM1GO15355 546 aaPredicted RBP13.39□□□□□ -0.27
CLN6-209ENST00000569336 BAG6P46379 1132 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 FAM182BQ5T319 152 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 TOGARAM1Q9Y4F4 1720 aa13.39□□□□□ -0.27
CLN6-209ENST00000569336 PARD3Q8TEW0 1356 aa13.38□□□□□ -0.27
CLN6-209ENST00000569336 ZEB1P37275 1124 aaPredicted RBP13.38□□□□□ -0.27
CLN6-209ENST00000569336 TNNT2P45379 298 aaPredicted RBP13.38□□□□□ -0.27
CLN6-209ENST00000569336 HSP90AB2PQ58FF8 381 aa13.38□□□□□ -0.27
CLN6-209ENST00000569336 AMER1Q5JTC6 1135 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms