RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 MAP3K19Q56UN5 1328 aa29.97■■■□□ 2.39
CLN3-234ENST00000568472 STRN4Q9NRL3 753 aa29.97■■■□□ 2.39
CLN3-234ENST00000568472 AXIN2Q9Y2T1 843 aa29.97■■■□□ 2.39
CLN3-234ENST00000568472 CCDC9Q9Y3X0 531 aaKnown RBP29.97■■■□□ 2.39
CLN3-234ENST00000568472 KIF24Q5T7B8 1368 aa29.97■■■□□ 2.39
CLN3-234ENST00000568472 AMPHP49418 695 aa29.96■■■□□ 2.39
CLN3-234ENST00000568472 COL5A2P05997 1499 aaPredicted RBP29.94■■■□□ 2.38
CLN3-234ENST00000568472 RTL1A6NKG5 1358 aa29.94■■■□□ 2.38
CLN3-234ENST00000568472 BLMP54132 1417 aaPredicted RBP29.94■■■□□ 2.38
CLN3-234ENST00000568472 RRS1Q15050 365 aaKnown RBP29.93■■■□□ 2.38
CLN3-234ENST00000568472 NRAPQ86VF7 1730 aa29.93■■■□□ 2.38
CLN3-234ENST00000568472 SPATA31A5Q5VU36 1347 aa29.93■■■□□ 2.38
CLN3-234ENST00000568472 SPATA31A7Q8IWB4 1347 aa29.93■■■□□ 2.38
CLN3-234ENST00000568472 COL18A1P39060 1754 aa29.92■■■□□ 2.38
CLN3-234ENST00000568472 ZNF316A6NFI3 1004 aaPredicted RBP29.92■■■□□ 2.38
CLN3-234ENST00000568472 FBLN1P23142 703 aa29.92■■■□□ 2.38
CLN3-234ENST00000568472 CDK12Q9NYV4 1490 aaPredicted RBP29.92■■■□□ 2.38
CLN3-234ENST00000568472 HOXC9P31274 260 aa29.91■■■□□ 2.38
CLN3-234ENST00000568472 WDR17Q8IZU2 1322 aa29.91■■■□□ 2.38
CLN3-234ENST00000568472 LARP1Q6PKG0 1096 aaKnown RBP29.9■■■□□ 2.38
CLN3-234ENST00000568472 ANKRD26Q9UPS8 1709 aa29.9■■■□□ 2.38
CLN3-234ENST00000568472 SPATA31A1Q5TZJ5 1347 aa29.89■■■□□ 2.38
CLN3-234ENST00000568472 CSB-PGBD3P0DP91 1061 aa29.88■■■□□ 2.37
CLN3-234ENST00000568472 TNNT2P45379 298 aaPredicted RBP29.88■■■□□ 2.37
CLN3-234ENST00000568472 DDX10Q13206 875 aaKnown RBP29.88■■■□□ 2.37
CLN3-234ENST00000568472 CC2D1BQ5T0F9 858 aaKnown RBP29.88■■■□□ 2.37
CLN3-234ENST00000568472 THRAP3Q9Y2W1 955 aaKnown RBP29.88■■■□□ 2.37
CLN3-234ENST00000568472 FLT4P35916 1363 aa29.88■■■□□ 2.37
CLN3-234ENST00000568472 CRB1P82279 1406 aa29.88■■■□□ 2.37
CLN3-234ENST00000568472 ONECUT3O60422 494 aaPredicted RBP29.87■■■□□ 2.37
CLN3-234ENST00000568472 TOM1L2Q6ZVM7 507 aa29.87■■■□□ 2.37
CLN3-234ENST00000568472 POLKQ9UBT6 870 aa29.87■■■□□ 2.37
CLN3-234ENST00000568472 ERBB3P21860 1342 aa29.87■■■□□ 2.37
CLN3-234ENST00000568472 LTN1O94822 1766 aa29.87■■■□□ 2.37
CLN3-234ENST00000568472 ANKRD24Q8TF21 1146 aa29.86■■■□□ 2.37
CLN3-234ENST00000568472 CARD10Q9BWT7 1032 aa29.85■■■□□ 2.37
CLN3-234ENST00000568472 EMILIN1Q9Y6C2 1016 aa29.85■■■□□ 2.37
CLN3-234ENST00000568472 ILDR2Q71H61 639 aa29.84■■■□□ 2.37
CLN3-234ENST00000568472 TCP11L2Q8N4U5 519 aa29.84■■■□□ 2.37
CLN3-234ENST00000568472 INSRP06213 1382 aa29.84■■■□□ 2.37
CLN3-234ENST00000568472 BARGINQ6ZT62 677 aa29.83■■■□□ 2.37
CLN3-234ENST00000568472 PPM1GO15355 546 aaPredicted RBP29.82■■■□□ 2.36
CLN3-234ENST00000568472 GLI3P10071 1580 aa29.81■■■□□ 2.36
CLN3-234ENST00000568472 SMG6Q86US8 1419 aaKnown RBP29.8■■■□□ 2.36
CLN3-234ENST00000568472 FAM98CQ17RN3 349 aaKnown RBP29.8■■■□□ 2.36
CLN3-234ENST00000568472 HSP90AB2PQ58FF8 381 aa29.8■■■□□ 2.36
CLN3-234ENST00000568472 USP35Q9P2H5 1018 aa29.8■■■□□ 2.36
CLN3-234ENST00000568472 NLRP2Q9NX02 1062 aa29.79■■■□□ 2.36
CLN3-234ENST00000568472 SEPT12Q8IYM1 358 aa29.77■■■□□ 2.36
CLN3-234ENST00000568472 LTV1Q96GA3 475 aaPredicted RBP29.77■■■□□ 2.36
CLN3-234ENST00000568472 CDCA7Q9BWT1 371 aaPredicted RBP29.77■■■□□ 2.36
CLN3-234ENST00000568472 RGS12O14924 1447 aa29.77■■■□□ 2.36
CLN3-234ENST00000568472 RGPD5Q99666 1765 aa29.75■■■□□ 2.35
CLN3-234ENST00000568472 CNGB1Q14028 1251 aaPredicted RBP29.74■■■□□ 2.35
CLN3-234ENST00000568472 A0A0G2JS52 829 aa29.73■■■□□ 2.35
CLN3-234ENST00000568472 MYT1Q01538 1121 aa29.73■■■□□ 2.35
CLN3-234ENST00000568472 PEAK1Q9H792 1746 aa29.72■■■□□ 2.35
CLN3-234ENST00000568472 MTHFSP49914 203 aa29.72■■■□□ 2.35
CLN3-234ENST00000568472 MAP2P11137 1827 aaKnown RBP29.72■■■□□ 2.35
CLN3-234ENST00000568472 FAM208AQ9UK61 1670 aaKnown RBP29.69■■■□□ 2.34
CLN3-234ENST00000568472 RALBP1Q15311 655 aa29.68■■■□□ 2.34
CLN3-234ENST00000568472 NBPF6Q5VWK0 638 aa29.67■■■□□ 2.34
CLN3-234ENST00000568472 NBPF4Q96M43 638 aa29.67■■■□□ 2.34
CLN3-234ENST00000568472 PARD3Q8TEW0 1356 aa29.66■■■□□ 2.34
CLN3-234ENST00000568472 EIF4A2Q14240 407 aaKnown RBP29.66■■■□□ 2.34
CLN3-234ENST00000568472 IL2RBP14784 551 aa29.65■■■□□ 2.34
CLN3-234ENST00000568472 KRT27Q7Z3Y8 459 aa29.65■■■□□ 2.34
CLN3-234ENST00000568472 THSD7AQ9UPZ6 1657 aa29.64■■■□□ 2.34
CLN3-234ENST00000568472 PPP2R1AP30153 589 aa29.64■■■□□ 2.34
CLN3-234ENST00000568472 DISP2A7MBM2 1401 aa29.62■■■□□ 2.33
CLN3-234ENST00000568472 PDE3BQ13370 1112 aa29.62■■■□□ 2.33
CLN3-234ENST00000568472 DDB1Q16531 1140 aa29.62■■■□□ 2.33
CLN3-234ENST00000568472 CFAP53Q96M91 514 aa29.62■■■□□ 2.33
CLN3-234ENST00000568472 EXOC5O00471 708 aa29.6■■■□□ 2.33
CLN3-234ENST00000568472 EYA1Q99502 592 aa29.6■■■□□ 2.33
CLN3-234ENST00000568472 RAPGEF4Q8WZA2 1011 aa29.59■■■□□ 2.33
CLN3-234ENST00000568472 DIAPH1O60610 1272 aaKnown RBP29.58■■■□□ 2.33
CLN3-234ENST00000568472 IL13P35225 146 aa29.58■■■□□ 2.33
CLN3-234ENST00000568472 NCAPD2Q15021 1401 aa29.57■■■□□ 2.32
CLN3-234ENST00000568472 IGSF1Q8N6C5 1336 aa29.56■■■□□ 2.32
CLN3-234ENST00000568472 PARP4Q9UKK3 1724 aaKnown RBP29.55■■■□□ 2.32
CLN3-234ENST00000568472 SOCS7O14512 581 aa29.55■■■□□ 2.32
CLN3-234ENST00000568472 TATP17735 454 aaPredicted RBP29.55■■■□□ 2.32
CLN3-234ENST00000568472 USHBP1Q8N6Y0 703 aa29.55■■■□□ 2.32
CLN3-234ENST00000568472 PLEKHG2Q9H7P9 1386 aa29.52■■■□□ 2.32
CLN3-234ENST00000568472 PRKRIP1Q9H875 184 aaPredicted RBP29.52■■■□□ 2.32
CLN3-234ENST00000568472 MYBBP1AQ9BQG0 1328 aaKnown RBP29.51■■■□□ 2.32
CLN3-234ENST00000568472 FAM196AQ6ZSG2 479 aa29.51■■■□□ 2.31
CLN3-234ENST00000568472 TNS2Q63HR2 1409 aa29.51■■■□□ 2.31
CLN3-234ENST00000568472 ZCRB1Q8TBF4 217 aaKnown RBP29.5■■■□□ 2.31
CLN3-234ENST00000568472 NUDCQ9Y266 331 aa29.5■■■□□ 2.31
CLN3-234ENST00000568472 OVOS2A0A0G2JMS6 1433 aa29.49■■■□□ 2.31
CLN3-234ENST00000568472 WNK3Q9BYP7 1800 aa29.49■■■□□ 2.31
CLN3-234ENST00000568472 BRWD3Q6RI45 1802 aa29.48■■■□□ 2.31
CLN3-234ENST00000568472 CCDC125Q86Z20 511 aa29.48■■■□□ 2.31
CLN3-234ENST00000568472 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.48■■■□□ 2.31
CLN3-234ENST00000568472 RGPD2P0DJD1 1756 aa29.47■■■□□ 2.31
CLN3-234ENST00000568472 COL3A1P02461 1466 aaPredicted RBP29.47■■■□□ 2.31
CLN3-234ENST00000568472 MEGF6O75095 1541 aa29.46■■■□□ 2.31
CLN3-234ENST00000568472 LRRC37A3O60309 1634 aa29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms