RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SOX12O15370 315 aa18.59■□□□□ 0.57
CLK3-216ENST00000564468 FAM98CQ17RN3 349 aaKnown RBP18.59■□□□□ 0.57
CLK3-216ENST00000564468 LTN1O94822 1766 aa18.59■□□□□ 0.57
CLK3-216ENST00000564468 MYOM1P52179 1685 aa18.59■□□□□ 0.57
CLK3-216ENST00000564468 NFAT5O94916 1531 aa18.59■□□□□ 0.57
CLK3-216ENST00000564468 ABCC6O95255 1503 aa18.58■□□□□ 0.56
CLK3-216ENST00000564468 COL5A2P05997 1499 aaPredicted RBP18.58■□□□□ 0.56
CLK3-216ENST00000564468 COG3Q96JB2 828 aa18.57■□□□□ 0.56
CLK3-216ENST00000564468 OVOS2A0A0J9YW53 1432 aa18.57■□□□□ 0.56
CLK3-216ENST00000564468 OVOS2Q6IE36 1432 aa18.57■□□□□ 0.56
CLK3-216ENST00000564468 KIF20BQ96Q89 1820 aa18.56■□□□□ 0.56
CLK3-216ENST00000564468 THRAP3Q9Y2W1 955 aaKnown RBP18.56■□□□□ 0.56
CLK3-216ENST00000564468 LARP1Q6PKG0 1096 aaKnown RBP18.55■□□□□ 0.56
CLK3-216ENST00000564468 BARGINQ6ZT62 677 aa18.55■□□□□ 0.56
CLK3-216ENST00000564468 POLR3GLQ9BT43 218 aa18.55■□□□□ 0.56
CLK3-216ENST00000564468 CRB1P82279 1406 aa18.55■□□□□ 0.56
CLK3-216ENST00000564468 THSD7AQ9UPZ6 1657 aa18.54■□□□□ 0.56
CLK3-216ENST00000564468 TCP11L2Q8N4U5 519 aa18.54■□□□□ 0.56
CLK3-216ENST00000564468 USP35Q9P2H5 1018 aa18.54■□□□□ 0.56
CLK3-216ENST00000564468 WDR17Q8IZU2 1322 aa18.52■□□□□ 0.56
CLK3-216ENST00000564468 PSDA5PKW4 1024 aaPredicted RBP18.52■□□□□ 0.56
CLK3-216ENST00000564468 TOM1L2Q6ZVM7 507 aa18.52■□□□□ 0.56
CLK3-216ENST00000564468 AXIN2Q9Y2T1 843 aa18.52■□□□□ 0.56
CLK3-216ENST00000564468 FYB1O15117 783 aa18.51■□□□□ 0.55
CLK3-216ENST00000564468 CSB-PGBD3P0DP91 1061 aa18.51■□□□□ 0.55
CLK3-216ENST00000564468 NSD3Q9BZ95 1437 aa18.49■□□□□ 0.55
CLK3-216ENST00000564468 LRP5O75197 1615 aa18.49■□□□□ 0.55
CLK3-216ENST00000564468 PARP4Q9UKK3 1724 aaKnown RBP18.49■□□□□ 0.55
CLK3-216ENST00000564468 CARD14Q9BXL6 1004 aa18.48■□□□□ 0.55
CLK3-216ENST00000564468 GGNBP2Q9H3C7 697 aa18.48■□□□□ 0.55
CLK3-216ENST00000564468 WNK3Q9BYP7 1800 aa18.47■□□□□ 0.55
CLK3-216ENST00000564468 PDE3BQ13370 1112 aa18.47■□□□□ 0.55
CLK3-216ENST00000564468 CDCA7Q9BWT1 371 aaPredicted RBP18.47■□□□□ 0.55
CLK3-216ENST00000564468 CARD10Q9BWT7 1032 aa18.47■□□□□ 0.55
CLK3-216ENST00000564468 CGNL1Q0VF96 1302 aa18.47■□□□□ 0.55
CLK3-216ENST00000564468 EN1Q05925 392 aaPredicted RBP18.46■□□□□ 0.55
CLK3-216ENST00000564468 IP6K1Q92551 441 aa18.46■□□□□ 0.55
CLK3-216ENST00000564468 FAM208AQ9UK61 1670 aaKnown RBP18.46■□□□□ 0.55
CLK3-216ENST00000564468 ERBB3P21860 1342 aa18.46■□□□□ 0.55
CLK3-216ENST00000564468 CCDC7Q96M83 1385 aa18.45■□□□□ 0.54
CLK3-216ENST00000564468 AMPHP49418 695 aa18.45■□□□□ 0.54
CLK3-216ENST00000564468 C11orf95C9JLR9 678 aaPredicted RBP18.44■□□□□ 0.54
CLK3-216ENST00000564468 MAP3K19Q56UN5 1328 aa18.44■□□□□ 0.54
CLK3-216ENST00000564468 MAP2P11137 1827 aaKnown RBP18.44■□□□□ 0.54
CLK3-216ENST00000564468 ANKRD26Q9UPS8 1709 aa18.43■□□□□ 0.54
CLK3-216ENST00000564468 R3HDM1Q15032 1099 aaKnown RBP18.43■□□□□ 0.54
CLK3-216ENST00000564468 FAM196AQ6ZSG2 479 aa18.43■□□□□ 0.54
CLK3-216ENST00000564468 ANKRD24Q8TF21 1146 aa18.43■□□□□ 0.54
CLK3-216ENST00000564468 RGPD1P0DJD0 1748 aa18.43■□□□□ 0.54
CLK3-216ENST00000564468 RTL1A6NKG5 1358 aa18.42■□□□□ 0.54
CLK3-216ENST00000564468 PANK3Q9H999 370 aa18.42■□□□□ 0.54
CLK3-216ENST00000564468 NLRP2Q9NX02 1062 aa18.42■□□□□ 0.54
CLK3-216ENST00000564468 HOXC9P31274 260 aa18.41■□□□□ 0.54
CLK3-216ENST00000564468 DDB1Q16531 1140 aa18.41■□□□□ 0.54
CLK3-216ENST00000564468 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
CLK3-216ENST00000564468 LRRC37A3O60309 1634 aa18.39■□□□□ 0.53
CLK3-216ENST00000564468 RRS1Q15050 365 aaKnown RBP18.39■□□□□ 0.53
CLK3-216ENST00000564468 FAM182BQ5T319 152 aa18.39■□□□□ 0.53
CLK3-216ENST00000564468 KIF7Q2M1P5 1343 aa18.39■□□□□ 0.53
CLK3-216ENST00000564468 FBLN1P23142 703 aa18.38■□□□□ 0.53
CLK3-216ENST00000564468 NSD2O96028 1365 aa18.38■□□□□ 0.53
CLK3-216ENST00000564468 KAT6BQ8WYB5 2073 aa18.38■□□□□ 0.53
CLK3-216ENST00000564468 DISP2A7MBM2 1401 aa18.38■□□□□ 0.53
CLK3-216ENST00000564468 EXOC5O00471 708 aa18.37■□□□□ 0.53
CLK3-216ENST00000564468 LTV1Q96GA3 475 aaPredicted RBP18.37■□□□□ 0.53
CLK3-216ENST00000564468 KNSTRNQ9Y448 316 aa18.37■□□□□ 0.53
CLK3-216ENST00000564468 SMG6Q86US8 1419 aaKnown RBP18.37■□□□□ 0.53
CLK3-216ENST00000564468 RGPD2P0DJD1 1756 aa18.36■□□□□ 0.53
CLK3-216ENST00000564468 IL2RBP14784 551 aa18.36■□□□□ 0.53
CLK3-216ENST00000564468 FLT4P35916 1363 aa18.36■□□□□ 0.53
CLK3-216ENST00000564468 EZH2Q15910 746 aaKnown RBP18.36■□□□□ 0.53
CLK3-216ENST00000564468 PARD3Q8TEW0 1356 aa18.36■□□□□ 0.53
CLK3-216ENST00000564468 SBF2Q86WG5 1849 aa18.35■□□□□ 0.53
CLK3-216ENST00000564468 OVOS2A0A0G2JMS6 1433 aa18.35■□□□□ 0.53
CLK3-216ENST00000564468 TRIM37O94972 964 aa18.35■□□□□ 0.53
CLK3-216ENST00000564468 APBA3O96018 575 aa18.35■□□□□ 0.53
CLK3-216ENST00000564468 INSRP06213 1382 aa18.34■□□□□ 0.53
CLK3-216ENST00000564468 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
CLK3-216ENST00000564468 NBPF14Q5TI25 921 aa18.34■□□□□ 0.53
CLK3-216ENST00000564468 CAMKK2Q96RR4 588 aa18.34■□□□□ 0.53
CLK3-216ENST00000564468 TNS1Q9HBL0 1735 aaKnown RBP18.34■□□□□ 0.53
CLK3-216ENST00000564468 PEAK1Q9H792 1746 aa18.32■□□□□ 0.52
CLK3-216ENST00000564468 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
CLK3-216ENST00000564468 PPM1GO15355 546 aaPredicted RBP18.31■□□□□ 0.52
CLK3-216ENST00000564468 EMILIN1Q9Y6C2 1016 aa18.31■□□□□ 0.52
CLK3-216ENST00000564468 HSP90AB2PQ58FF8 381 aa18.3■□□□□ 0.52
CLK3-216ENST00000564468 MORC1Q86VD1 984 aa18.3■□□□□ 0.52
CLK3-216ENST00000564468 BCL9O00512 1426 aa18.3■□□□□ 0.52
CLK3-216ENST00000564468 WASHC2AQ641Q2 1341 aa18.29■□□□□ 0.52
CLK3-216ENST00000564468 YY1P25490 414 aa18.29■□□□□ 0.52
CLK3-216ENST00000564468 MARCH10Q8NA82 808 aaPredicted RBP18.29■□□□□ 0.52
CLK3-216ENST00000564468 POLKQ9UBT6 870 aa18.29■□□□□ 0.52
CLK3-216ENST00000564468 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
CLK3-216ENST00000564468 PPP1R1BQ9UD71 204 aaPredicted RBP18.28■□□□□ 0.52
CLK3-216ENST00000564468 NBPF6Q5VWK0 638 aa18.27■□□□□ 0.52
CLK3-216ENST00000564468 NBPF4Q96M43 638 aa18.27■□□□□ 0.52
CLK3-216ENST00000564468 RAPGEF4Q8WZA2 1011 aa18.26■□□□□ 0.51
CLK3-216ENST00000564468 AMER1Q5JTC6 1135 aaPredicted RBP18.25■□□□□ 0.51
CLK3-216ENST00000564468 SPON1Q9HCB6 807 aa18.25■□□□□ 0.51
CLK3-216ENST00000564468 PER1O15534 1290 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms