RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 CAMTA1Q9Y6Y1 1673 aa22.81■■□□□ 1.24
RNF40-206ENST00000564260 GJD4Q96KN9 370 aaPredicted RBP22.8■■□□□ 1.24
RNF40-206ENST00000564260 COL18A1P39060 1754 aa22.79■■□□□ 1.24
RNF40-206ENST00000564260 IP6K1Q92551 441 aa22.79■■□□□ 1.24
RNF40-206ENST00000564260 SOX12O15370 315 aa22.78■■□□□ 1.24
RNF40-206ENST00000564260 EVA1CP58658 441 aa22.78■■□□□ 1.24
RNF40-206ENST00000564260 MAP3K19Q56UN5 1328 aa22.78■■□□□ 1.24
RNF40-206ENST00000564260 THRAP3Q9Y2W1 955 aaKnown RBP22.77■■□□□ 1.24
RNF40-206ENST00000564260 SPATA31A5Q5VU36 1347 aa22.76■■□□□ 1.23
RNF40-206ENST00000564260 SPATA31A7Q8IWB4 1347 aa22.76■■□□□ 1.23
RNF40-206ENST00000564260 WDR17Q8IZU2 1322 aa22.76■■□□□ 1.23
RNF40-206ENST00000564260 FLT4P35916 1363 aa22.76■■□□□ 1.23
RNF40-206ENST00000564260 CRB1P82279 1406 aa22.75■■□□□ 1.23
RNF40-206ENST00000564260 ONECUT3O60422 494 aaPredicted RBP22.75■■□□□ 1.23
RNF40-206ENST00000564260 AMPHP49418 695 aa22.75■■□□□ 1.23
RNF40-206ENST00000564260 MORC1Q86VD1 984 aa22.75■■□□□ 1.23
RNF40-206ENST00000564260 ERBB3P21860 1342 aa22.75■■□□□ 1.23
RNF40-206ENST00000564260 LTN1O94822 1766 aa22.74■■□□□ 1.23
RNF40-206ENST00000564260 AXIN2Q9Y2T1 843 aa22.74■■□□□ 1.23
RNF40-206ENST00000564260 SMG6Q86US8 1419 aaKnown RBP22.74■■□□□ 1.23
RNF40-206ENST00000564260 HOXC9P31274 260 aa22.73■■□□□ 1.23
RNF40-206ENST00000564260 SPATA31A1Q5TZJ5 1347 aa22.73■■□□□ 1.23
RNF40-206ENST00000564260 ZBTB7CA1YPR0 619 aa22.72■■□□□ 1.23
RNF40-206ENST00000564260 STRN4Q9NRL3 753 aa22.72■■□□□ 1.23
RNF40-206ENST00000564260 INSRP06213 1382 aa22.72■■□□□ 1.23
RNF40-206ENST00000564260 BARGINQ6ZT62 677 aa22.71■■□□□ 1.23
RNF40-206ENST00000564260 CCDC9Q9Y3X0 531 aaKnown RBP22.71■■□□□ 1.23
RNF40-206ENST00000564260 GLI3P10071 1580 aa22.71■■□□□ 1.23
RNF40-206ENST00000564260 ZNF316A6NFI3 1004 aaPredicted RBP22.7■■□□□ 1.22
RNF40-206ENST00000564260 RRS1Q15050 365 aaKnown RBP22.7■■□□□ 1.22
RNF40-206ENST00000564260 LARP1Q6PKG0 1096 aaKnown RBP22.7■■□□□ 1.22
RNF40-206ENST00000564260 CARD10Q9BWT7 1032 aa22.7■■□□□ 1.22
RNF40-206ENST00000564260 TCP11L2Q8N4U5 519 aa22.69■■□□□ 1.22
RNF40-206ENST00000564260 CDCA7Q9BWT1 371 aaPredicted RBP22.69■■□□□ 1.22
RNF40-206ENST00000564260 POLKQ9UBT6 870 aa22.69■■□□□ 1.22
RNF40-206ENST00000564260 FAM208AQ9UK61 1670 aaKnown RBP22.68■■□□□ 1.22
RNF40-206ENST00000564260 TOM1L2Q6ZVM7 507 aa22.68■■□□□ 1.22
RNF40-206ENST00000564260 ANKRD24Q8TF21 1146 aa22.68■■□□□ 1.22
RNF40-206ENST00000564260 CSB-PGBD3P0DP91 1061 aa22.67■■□□□ 1.22
RNF40-206ENST00000564260 RGS12O14924 1447 aa22.65■■□□□ 1.22
RNF40-206ENST00000564260 EMILIN1Q9Y6C2 1016 aa22.65■■□□□ 1.22
RNF40-206ENST00000564260 CC2D1BQ5T0F9 858 aaKnown RBP22.64■■□□□ 1.21
RNF40-206ENST00000564260 FBLN1P23142 703 aa22.63■■□□□ 1.21
RNF40-206ENST00000564260 DDX10Q13206 875 aaKnown RBP22.62■■□□□ 1.21
RNF40-206ENST00000564260 PLEKHG2Q9H7P9 1386 aa22.62■■□□□ 1.21
RNF40-206ENST00000564260 THSD7AQ9UPZ6 1657 aa22.62■■□□□ 1.21
RNF40-206ENST00000564260 TNNT2P45379 298 aaPredicted RBP22.61■■□□□ 1.21
RNF40-206ENST00000564260 FAM98CQ17RN3 349 aaKnown RBP22.61■■□□□ 1.21
RNF40-206ENST00000564260 HSP90AB2PQ58FF8 381 aa22.61■■□□□ 1.21
RNF40-206ENST00000564260 ILDR2Q71H61 639 aa22.61■■□□□ 1.21
RNF40-206ENST00000564260 PEAK1Q9H792 1746 aa22.61■■□□□ 1.21
RNF40-206ENST00000564260 SEPT12Q8IYM1 358 aa22.6■■□□□ 1.21
RNF40-206ENST00000564260 NLRP2Q9NX02 1062 aa22.6■■□□□ 1.21
RNF40-206ENST00000564260 MAP2P11137 1827 aaKnown RBP22.59■■□□□ 1.21
RNF40-206ENST00000564260 RGPD5Q99666 1765 aa22.59■■□□□ 1.21
RNF40-206ENST00000564260 PPM1GO15355 546 aaPredicted RBP22.59■■□□□ 1.21
RNF40-206ENST00000564260 PARD3Q8TEW0 1356 aa22.59■■□□□ 1.21
RNF40-206ENST00000564260 RALBP1Q15311 655 aa22.58■■□□□ 1.21
RNF40-206ENST00000564260 USP35Q9P2H5 1018 aa22.58■■□□□ 1.21
RNF40-206ENST00000564260 DISP2A7MBM2 1401 aa22.57■■□□□ 1.2
RNF40-206ENST00000564260 NCAPD2Q15021 1401 aa22.57■■□□□ 1.2
RNF40-206ENST00000564260 PARP4Q9UKK3 1724 aaKnown RBP22.55■■□□□ 1.2
RNF40-206ENST00000564260 MTHFSP49914 203 aa22.55■■□□□ 1.2
RNF40-206ENST00000564260 IL2RBP14784 551 aa22.54■■□□□ 1.2
RNF40-206ENST00000564260 LTV1Q96GA3 475 aaPredicted RBP22.54■■□□□ 1.2
RNF40-206ENST00000564260 A0A0G2JS52 829 aa22.53■■□□□ 1.2
RNF40-206ENST00000564260 MYT1Q01538 1121 aa22.53■■□□□ 1.2
RNF40-206ENST00000564260 KRT27Q7Z3Y8 459 aa22.53■■□□□ 1.2
RNF40-206ENST00000564260 EIF4A2Q14240 407 aaKnown RBP22.52■■□□□ 1.2
RNF40-206ENST00000564260 NBPF6Q5VWK0 638 aa22.52■■□□□ 1.2
RNF40-206ENST00000564260 NBPF4Q96M43 638 aa22.52■■□□□ 1.2
RNF40-206ENST00000564260 DDB1Q16531 1140 aa22.51■■□□□ 1.19
RNF40-206ENST00000564260 CFAP53Q96M91 514 aa22.51■■□□□ 1.19
RNF40-206ENST00000564260 WNK3Q9BYP7 1800 aa22.51■■□□□ 1.19
RNF40-206ENST00000564260 PPP2R1AP30153 589 aa22.5■■□□□ 1.19
RNF40-206ENST00000564260 PDE3BQ13370 1112 aa22.5■■□□□ 1.19
RNF40-206ENST00000564260 IGSF1Q8N6C5 1336 aa22.5■■□□□ 1.19
RNF40-206ENST00000564260 TNS2Q63HR2 1409 aa22.49■■□□□ 1.19
RNF40-206ENST00000564260 BCL9O00512 1426 aa22.48■■□□□ 1.19
RNF40-206ENST00000564260 EXOC5O00471 708 aa22.48■■□□□ 1.19
RNF40-206ENST00000564260 SOCS7O14512 581 aa22.48■■□□□ 1.19
RNF40-206ENST00000564260 RAPGEF4Q8WZA2 1011 aa22.48■■□□□ 1.19
RNF40-206ENST00000564260 OVOS2A0A0G2JMS6 1433 aa22.48■■□□□ 1.19
RNF40-206ENST00000564260 DIAPH1O60610 1272 aaKnown RBP22.47■■□□□ 1.19
RNF40-206ENST00000564260 IL13P35225 146 aa22.47■■□□□ 1.19
RNF40-206ENST00000564260 EYA1Q99502 592 aa22.47■■□□□ 1.19
RNF40-206ENST00000564260 LRRC37A3O60309 1634 aa22.46■■□□□ 1.19
RNF40-206ENST00000564260 CCDC125Q86Z20 511 aa22.46■■□□□ 1.19
RNF40-206ENST00000564260 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.46■■□□□ 1.19
RNF40-206ENST00000564260 KDRP35968 1356 aa22.46■■□□□ 1.19
RNF40-206ENST00000564260 TATP17735 454 aaPredicted RBP22.45■■□□□ 1.18
RNF40-206ENST00000564260 FAM196AQ6ZSG2 479 aa22.45■■□□□ 1.18
RNF40-206ENST00000564260 COL3A1P02461 1466 aaPredicted RBP22.45■■□□□ 1.18
RNF40-206ENST00000564260 MYBBP1AQ9BQG0 1328 aaKnown RBP22.44■■□□□ 1.18
RNF40-206ENST00000564260 PRKRIP1Q9H875 184 aaPredicted RBP22.43■■□□□ 1.18
RNF40-206ENST00000564260 MEGF6O75095 1541 aa22.42■■□□□ 1.18
RNF40-206ENST00000564260 NUDCQ9Y266 331 aa22.42■■□□□ 1.18
RNF40-206ENST00000564260 BRWD3Q6RI45 1802 aa22.42■■□□□ 1.18
RNF40-206ENST00000564260 RGPD1P0DJD0 1748 aa22.42■■□□□ 1.18
RNF40-206ENST00000564260 CNGB1Q14028 1251 aaPredicted RBP22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms