RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 RGPD5Q99666 1765 aa23.04■■□□□ 1.28
CLK3-207ENST00000562389 ZBTB7CA1YPR0 619 aa23.03■■□□□ 1.28
CLK3-207ENST00000562389 RGS12O14924 1447 aa23.02■■□□□ 1.28
CLK3-207ENST00000562389 NSD2O96028 1365 aa23■■□□□ 1.27
CLK3-207ENST00000562389 STRN4Q9NRL3 753 aa22.99■■□□□ 1.27
CLK3-207ENST00000562389 CCDC9Q9Y3X0 531 aaKnown RBP22.99■■□□□ 1.27
CLK3-207ENST00000562389 SPATA31A5Q5VU36 1347 aa22.99■■□□□ 1.27
CLK3-207ENST00000562389 SPATA31A7Q8IWB4 1347 aa22.99■■□□□ 1.27
CLK3-207ENST00000562389 EVA1CP58658 441 aa22.98■■□□□ 1.27
CLK3-207ENST00000562389 AXIN2Q9Y2T1 843 aa22.98■■□□□ 1.27
CLK3-207ENST00000562389 KNSTRNQ9Y448 316 aa22.96■■□□□ 1.27
CLK3-207ENST00000562389 BLMP54132 1417 aaPredicted RBP22.95■■□□□ 1.26
CLK3-207ENST00000562389 CRB1P82279 1406 aa22.95■■□□□ 1.26
CLK3-207ENST00000562389 MAP3K19Q56UN5 1328 aa22.95■■□□□ 1.26
CLK3-207ENST00000562389 SPATA31A1Q5TZJ5 1347 aa22.95■■□□□ 1.26
CLK3-207ENST00000562389 LARP1Q6PKG0 1096 aaKnown RBP22.95■■□□□ 1.26
CLK3-207ENST00000562389 RTL1A6NKG5 1358 aa22.94■■□□□ 1.26
CLK3-207ENST00000562389 THSD7AQ9UPZ6 1657 aa22.93■■□□□ 1.26
CLK3-207ENST00000562389 WDR17Q8IZU2 1322 aa22.93■■□□□ 1.26
CLK3-207ENST00000562389 PER1O15534 1290 aaPredicted RBP22.93■■□□□ 1.26
CLK3-207ENST00000562389 ONECUT3O60422 494 aaPredicted RBP22.93■■□□□ 1.26
CLK3-207ENST00000562389 FBLN1P23142 703 aa22.93■■□□□ 1.26
CLK3-207ENST00000562389 IP6K1Q92551 441 aa22.92■■□□□ 1.26
CLK3-207ENST00000562389 MAP2P11137 1827 aaKnown RBP22.92■■□□□ 1.26
CLK3-207ENST00000562389 PEAK1Q9H792 1746 aa22.91■■□□□ 1.26
CLK3-207ENST00000562389 KIF24Q5T7B8 1368 aa22.91■■□□□ 1.26
CLK3-207ENST00000562389 FAM208AQ9UK61 1670 aaKnown RBP22.91■■□□□ 1.26
CLK3-207ENST00000562389 RRS1Q15050 365 aaKnown RBP22.91■■□□□ 1.26
CLK3-207ENST00000562389 AMER1Q5JTC6 1135 aaPredicted RBP22.91■■□□□ 1.26
CLK3-207ENST00000562389 BRWD3Q6RI45 1802 aa22.91■■□□□ 1.26
CLK3-207ENST00000562389 ERBB3P21860 1342 aa22.9■■□□□ 1.26
CLK3-207ENST00000562389 WNK3Q9BYP7 1800 aa22.9■■□□□ 1.26
CLK3-207ENST00000562389 HOXC9P31274 260 aa22.89■■□□□ 1.25
CLK3-207ENST00000562389 AMPHP49418 695 aa22.89■■□□□ 1.25
CLK3-207ENST00000562389 FAM98CQ17RN3 349 aaKnown RBP22.89■■□□□ 1.25
CLK3-207ENST00000562389 THRAP3Q9Y2W1 955 aaKnown RBP22.89■■□□□ 1.25
CLK3-207ENST00000562389 BARGINQ6ZT62 677 aa22.88■■□□□ 1.25
CLK3-207ENST00000562389 TOM1L2Q6ZVM7 507 aa22.88■■□□□ 1.25
CLK3-207ENST00000562389 TCP11L2Q8N4U5 519 aa22.88■■□□□ 1.25
CLK3-207ENST00000562389 CSB-PGBD3P0DP91 1061 aa22.87■■□□□ 1.25
CLK3-207ENST00000562389 SEPT12Q8IYM1 358 aa22.87■■□□□ 1.25
CLK3-207ENST00000562389 USP35Q9P2H5 1018 aa22.87■■□□□ 1.25
CLK3-207ENST00000562389 FLT4P35916 1363 aa22.87■■□□□ 1.25
CLK3-207ENST00000562389 NPC1L1Q9UHC9 1359 aa22.87■■□□□ 1.25
CLK3-207ENST00000562389 ANKRD24Q8TF21 1146 aa22.86■■□□□ 1.25
CLK3-207ENST00000562389 PARP4Q9UKK3 1724 aaKnown RBP22.85■■□□□ 1.25
CLK3-207ENST00000562389 CARD10Q9BWT7 1032 aa22.85■■□□□ 1.25
CLK3-207ENST00000562389 MORC1Q86VD1 984 aa22.84■■□□□ 1.25
CLK3-207ENST00000562389 EMILIN1Q9Y6C2 1016 aa22.84■■□□□ 1.25
CLK3-207ENST00000562389 INSRP06213 1382 aa22.83■■□□□ 1.25
CLK3-207ENST00000562389 SMG6Q86US8 1419 aaKnown RBP22.82■■□□□ 1.24
CLK3-207ENST00000562389 A0A0G2JS52 829 aa22.82■■□□□ 1.24
CLK3-207ENST00000562389 MYT1Q01538 1121 aa22.82■■□□□ 1.24
CLK3-207ENST00000562389 POLKQ9UBT6 870 aa22.82■■□□□ 1.24
CLK3-207ENST00000562389 RGPD2P0DJD1 1756 aa22.81■■□□□ 1.24
CLK3-207ENST00000562389 TNNT2P45379 298 aaPredicted RBP22.81■■□□□ 1.24
CLK3-207ENST00000562389 LRRC37A3O60309 1634 aa22.8■■□□□ 1.24
CLK3-207ENST00000562389 DISP2A7MBM2 1401 aa22.8■■□□□ 1.24
CLK3-207ENST00000562389 HSP90AB2PQ58FF8 381 aa22.79■■□□□ 1.24
CLK3-207ENST00000562389 LTV1Q96GA3 475 aaPredicted RBP22.79■■□□□ 1.24
CLK3-207ENST00000562389 NLRP2Q9NX02 1062 aa22.79■■□□□ 1.24
CLK3-207ENST00000562389 CC2D1BQ5T0F9 858 aaKnown RBP22.78■■□□□ 1.24
CLK3-207ENST00000562389 KRT27Q7Z3Y8 459 aa22.78■■□□□ 1.24
CLK3-207ENST00000562389 PPM1GO15355 546 aaPredicted RBP22.77■■□□□ 1.24
CLK3-207ENST00000562389 CDCA7Q9BWT1 371 aaPredicted RBP22.77■■□□□ 1.24
CLK3-207ENST00000562389 IL2RBP14784 551 aa22.71■■□□□ 1.23
CLK3-207ENST00000562389 NBPF6Q5VWK0 638 aa22.71■■□□□ 1.23
CLK3-207ENST00000562389 UPF1Q92900 1129 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLK3-207ENST00000562389 NBPF4Q96M43 638 aa22.71■■□□□ 1.23
CLK3-207ENST00000562389 NCAPD2Q15021 1401 aa22.71■■□□□ 1.23
CLK3-207ENST00000562389 PDE3BQ13370 1112 aa22.7■■□□□ 1.22
CLK3-207ENST00000562389 DDB1Q16531 1140 aa22.7■■□□□ 1.22
CLK3-207ENST00000562389 TNS2Q63HR2 1409 aa22.7■■□□□ 1.22
CLK3-207ENST00000562389 DDX10Q13206 875 aaKnown RBP22.68■■□□□ 1.22
CLK3-207ENST00000562389 EIF4A2Q14240 407 aaKnown RBP22.68■■□□□ 1.22
CLK3-207ENST00000562389 CNGB1Q14028 1251 aaPredicted RBP22.67■■□□□ 1.22
CLK3-207ENST00000562389 MTHFSP49914 203 aa22.66■■□□□ 1.22
CLK3-207ENST00000562389 MEGF6O75095 1541 aa22.66■■□□□ 1.22
CLK3-207ENST00000562389 EXOC5O00471 708 aa22.65■■□□□ 1.22
CLK3-207ENST00000562389 USHBP1Q8N6Y0 703 aa22.65■■□□□ 1.22
CLK3-207ENST00000562389 RGPD1P0DJD0 1748 aa22.65■■□□□ 1.22
CLK3-207ENST00000562389 OVOS2A0A0G2JMS6 1433 aa22.65■■□□□ 1.22
CLK3-207ENST00000562389 ZNF316A6NFI3 1004 aaPredicted RBP22.64■■□□□ 1.21
CLK3-207ENST00000562389 FAM182BQ5T319 152 aa22.64■■□□□ 1.21
CLK3-207ENST00000562389 FAM196AQ6ZSG2 479 aa22.64■■□□□ 1.21
CLK3-207ENST00000562389 EYA1Q99502 592 aa22.64■■□□□ 1.21
CLK3-207ENST00000562389 SHANK3Q9BYB0 1731 aa22.64■■□□□ 1.21
CLK3-207ENST00000562389 PARD3Q8TEW0 1356 aa22.63■■□□□ 1.21
CLK3-207ENST00000562389 CCDC125Q86Z20 511 aa22.62■■□□□ 1.21
CLK3-207ENST00000562389 BCL9O00512 1426 aa22.62■■□□□ 1.21
CLK3-207ENST00000562389 EP400Q96L91 3159 aa22.62■■□□□ 1.21
CLK3-207ENST00000562389 SBF2Q86WG5 1849 aa22.61■■□□□ 1.21
CLK3-207ENST00000562389 IGSF1Q8N6C5 1336 aa22.61■■□□□ 1.21
CLK3-207ENST00000562389 PKD1L3Q7Z443 1732 aa22.61■■□□□ 1.21
CLK3-207ENST00000562389 MARCH10Q8NA82 808 aaPredicted RBP22.61■■□□□ 1.21
CLK3-207ENST00000562389 RAPGEF4Q8WZA2 1011 aa22.61■■□□□ 1.21
CLK3-207ENST00000562389 COL3A1P02461 1466 aaPredicted RBP22.6■■□□□ 1.21
CLK3-207ENST00000562389 TNS1Q9HBL0 1735 aaKnown RBP22.6■■□□□ 1.21
CLK3-207ENST00000562389 TATP17735 454 aaPredicted RBP22.59■■□□□ 1.21
CLK3-207ENST00000562389 IL13P35225 146 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms