RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.1■■□□□ 1.29
RAB40C-206ENST00000561781 PCDHB15Q9Y5E8 787 aa23.1■■□□□ 1.29
RAB40C-206ENST00000561781 NRXN3Q9Y4C0 1643 aa23.1■■□□□ 1.29
RAB40C-206ENST00000561781 MFAP1P55081 439 aaKnown RBP23.1■■□□□ 1.29
RAB40C-206ENST00000561781 MYRIPQ8NFW9 859 aa23.1■■□□□ 1.29
RAB40C-206ENST00000561781 PIK3C2GO75747 1445 aa23.09■■□□□ 1.29
RAB40C-206ENST00000561781 GOLGA6L22H0YM25 854 aa23.09■■□□□ 1.29
RAB40C-206ENST00000561781 DMRT2Q9Y5R5 561 aa23.09■■□□□ 1.29
RAB40C-206ENST00000561781 PLEKHG1Q9ULL1 1385 aa23.08■■□□□ 1.29
RAB40C-206ENST00000561781 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
RAB40C-206ENST00000561781 SMC5Q8IY18 1101 aa23.08■■□□□ 1.29
RAB40C-206ENST00000561781 MYOM2P54296 1465 aa23.08■■□□□ 1.29
RAB40C-206ENST00000561781 VGLL3A8MV65 326 aa23.08■■□□□ 1.28
RAB40C-206ENST00000561781 GPRASP1Q5JY77 1395 aa23.08■■□□□ 1.28
RAB40C-206ENST00000561781 TMF1P82094 1093 aa23.07■■□□□ 1.28
RAB40C-206ENST00000561781 KLHL40Q2TBA0 621 aa23.07■■□□□ 1.28
RAB40C-206ENST00000561781 METP08581 1390 aa23.07■■□□□ 1.28
RAB40C-206ENST00000561781 RBM25P49756 843 aaKnown RBP23.06■■□□□ 1.28
RAB40C-206ENST00000561781 ZNF445P59923 1031 aa23.06■■□□□ 1.28
RAB40C-206ENST00000561781 HDGFP51858 240 aaKnown RBP23.06■■□□□ 1.28
RAB40C-206ENST00000561781 NRXN1Q9ULB1 1477 aa23.05■■□□□ 1.28
RAB40C-206ENST00000561781 RBM33Q96EV2 1170 aaKnown RBP23.05■■□□□ 1.28
RAB40C-206ENST00000561781 KNSTRNQ9Y448 316 aa23.05■■□□□ 1.28
RAB40C-206ENST00000561781 SNX21Q969T3 373 aa23.04■■□□□ 1.28
RAB40C-206ENST00000561781 CCDC39Q9UFE4 941 aa23.04■■□□□ 1.28
RAB40C-206ENST00000561781 MED14O60244 1454 aa23.04■■□□□ 1.28
RAB40C-206ENST00000561781 PRIMPOLQ96LW4 560 aa23.03■■□□□ 1.28
RAB40C-206ENST00000561781 HMGN5P82970 282 aaKnown RBP23.03■■□□□ 1.28
RAB40C-206ENST00000561781 ALKQ9UM73 1620 aa23.03■■□□□ 1.28
RAB40C-206ENST00000561781 PLCD3Q8N3E9 789 aa23.02■■□□□ 1.28
RAB40C-206ENST00000561781 STK26Q9P289 416 aa23.02■■□□□ 1.28
RAB40C-206ENST00000561781 ZNF335Q9H4Z2 1342 aaPredicted RBP23.02■■□□□ 1.28
RAB40C-206ENST00000561781 DNTTIP2Q5QJE6 756 aaKnown RBP23.02■■□□□ 1.28
RAB40C-206ENST00000561781 ASXL1Q8IXJ9 1541 aa23.02■■□□□ 1.28
RAB40C-206ENST00000561781 SETBP1Q9Y6X0 1596 aa23.01■■□□□ 1.27
RAB40C-206ENST00000561781 GTF2F1P35269 517 aaKnown RBP eCLIP23.01■■□□□ 1.27
RAB40C-206ENST00000561781 AMER1Q5JTC6 1135 aaPredicted RBP23.01■■□□□ 1.27
RAB40C-206ENST00000561781 DDX49Q9Y6V7 483 aaKnown RBP23.01■■□□□ 1.27
RAB40C-206ENST00000561781 LAMC1P11047 1609 aa23.01■■□□□ 1.27
RAB40C-206ENST00000561781 HSP90AB1P08238 724 aaKnown RBP23■■□□□ 1.27
RAB40C-206ENST00000561781 ZNF710Q8N1W2 664 aa23■■□□□ 1.27
RAB40C-206ENST00000561781 RWDD1Q9H446 243 aaPredicted RBP23■■□□□ 1.27
RAB40C-206ENST00000561781 CGNQ9P2M7 1197 aaKnown RBP23■■□□□ 1.27
RAB40C-206ENST00000561781 RLBP1P12271 317 aa22.99■■□□□ 1.27
RAB40C-206ENST00000561781 ATP2B3Q16720 1220 aa22.99■■□□□ 1.27
RAB40C-206ENST00000561781 CLEC17AQ6ZS10 378 aa22.99■■□□□ 1.27
RAB40C-206ENST00000561781 C14orf93Q9H972 538 aaKnown RBP22.99■■□□□ 1.27
RAB40C-206ENST00000561781 PTPRUQ92729 1446 aa22.99■■□□□ 1.27
RAB40C-206ENST00000561781 TNNQ9UQP3 1299 aa22.98■■□□□ 1.27
RAB40C-206ENST00000561781 SETD1AO15047 1707 aaKnown RBP22.98■■□□□ 1.27
RAB40C-206ENST00000561781 SLC20A2Q08357 652 aa22.96■■□□□ 1.27
RAB40C-206ENST00000561781 KIAA2012Q0VF49 1180 aa22.96■■□□□ 1.27
RAB40C-206ENST00000561781 TRAK1Q9UPV9 953 aa22.94■■□□□ 1.26
RAB40C-206ENST00000561781 KCNA6P17658 529 aa22.94■■□□□ 1.26
RAB40C-206ENST00000561781 SAFB2Q14151 953 aaKnown RBP eCLIP22.93■■□□□ 1.26
RAB40C-206ENST00000561781 TBX22Q9Y458 520 aa22.93■■□□□ 1.26
RAB40C-206ENST00000561781 RARSP54136 660 aaKnown RBP22.93■■□□□ 1.26
RAB40C-206ENST00000561781 RBSNQ9H1K0 784 aa22.93■■□□□ 1.26
RAB40C-206ENST00000561781 ADGRB1O14514 1584 aa22.93■■□□□ 1.26
RAB40C-206ENST00000561781 AMOTL2Q9Y2J4 779 aa22.92■■□□□ 1.26
RAB40C-206ENST00000561781 STRCP1A6NGW2 1772 aa22.91■■□□□ 1.26
RAB40C-206ENST00000561781 ZNF771Q7L3S4 317 aaPredicted RBP22.91■■□□□ 1.26
RAB40C-206ENST00000561781 KIF3AQ9Y496 699 aa22.91■■□□□ 1.26
RAB40C-206ENST00000561781 ZSCAN23Q3MJ62 389 aa22.9■■□□□ 1.26
RAB40C-206ENST00000561781 WWC1Q8IX03 1113 aa22.9■■□□□ 1.26
RAB40C-206ENST00000561781 DNAJC2Q99543 621 aaKnown RBP22.9■■□□□ 1.26
RAB40C-206ENST00000561781 TEX2Q8IWB9 1127 aa22.9■■□□□ 1.26
RAB40C-206ENST00000561781 WAPLQ7Z5K2 1190 aa22.89■■□□□ 1.25
RAB40C-206ENST00000561781 PDCL2Q8N4E4 241 aa22.89■■□□□ 1.25
RAB40C-206ENST00000561781 NGEFQ8N5V2 710 aa22.89■■□□□ 1.25
RAB40C-206ENST00000561781 ZBTB22O15209 634 aa22.88■■□□□ 1.25
RAB40C-206ENST00000561781 IRX5P78411 483 aaPredicted RBP22.88■■□□□ 1.25
RAB40C-206ENST00000561781 BCL2L13Q9BXK5 485 aa22.88■■□□□ 1.25
RAB40C-206ENST00000561781 YTHDC2Q9H6S0 1430 aaKnown RBP22.88■■□□□ 1.25
RAB40C-206ENST00000561781 FOXD4L1Q9NU39 408 aa22.88■■□□□ 1.25
RAB40C-206ENST00000561781 ROBO2Q9HCK4 1378 aa22.88■■□□□ 1.25
RAB40C-206ENST00000561781 BAG4O95429 457 aaKnown RBP22.87■■□□□ 1.25
RAB40C-206ENST00000561781 FEZ1Q99689 392 aa22.87■■□□□ 1.25
RAB40C-206ENST00000561781 DIP2AQ14689 1571 aa22.86■■□□□ 1.25
RAB40C-206ENST00000561781 SSFA2P28290 1259 aa22.85■■□□□ 1.25
RAB40C-206ENST00000561781 CAVIN1Q6NZI2 390 aaKnown RBP22.85■■□□□ 1.25
RAB40C-206ENST00000561781 SPDYE4A6NLX3 237 aa22.84■■□□□ 1.25
RAB40C-206ENST00000561781 IRX3P78415 501 aaPredicted RBP22.84■■□□□ 1.25
RAB40C-206ENST00000561781 GABPB1Q06547 395 aaPredicted RBP22.84■■□□□ 1.25
RAB40C-206ENST00000561781 ZFP91Q96JP5 570 aaPredicted RBP22.84■■□□□ 1.25
RAB40C-206ENST00000561781 CCDC66A2RUB6 948 aa22.83■■□□□ 1.25
RAB40C-206ENST00000561781 CHRM1P11229 460 aaPredicted RBP22.83■■□□□ 1.25
RAB40C-206ENST00000561781 PRIM1P49642 420 aaKnown RBP22.83■■□□□ 1.25
RAB40C-206ENST00000561781 TSC1Q92574 1164 aa22.83■■□□□ 1.25
RAB40C-206ENST00000561781 PRAM1Q96QH2 718 aa22.82■■□□□ 1.24
RAB40C-206ENST00000561781 CHD2O14647 1828 aaKnown RBP22.82■■□□□ 1.24
RAB40C-206ENST00000561781 CD2BP2O95400 341 aaKnown RBP22.81■■□□□ 1.24
RAB40C-206ENST00000561781 MVPQ14764 893 aaKnown RBP22.81■■□□□ 1.24
RAB40C-206ENST00000561781 JARID2Q92833 1246 aaPredicted RBP22.81■■□□□ 1.24
RAB40C-206ENST00000561781 BCL2L12Q9HB09 334 aa22.81■■□□□ 1.24
RAB40C-206ENST00000561781 PTMAP06454 111 aaKnown RBP22.81■■□□□ 1.24
RAB40C-206ENST00000561781 KCNJ4P48050 445 aa22.81■■□□□ 1.24
RAB40C-206ENST00000561781 XRN1Q8IZH2 1706 aaKnown RBP22.8■■□□□ 1.24
RAB40C-206ENST00000561781 KIAA1210Q9ULL0 1709 aa22.8■■□□□ 1.24
RAB40C-206ENST00000561781 K7ELQ4 463 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms