RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 ZC3H4Q9UPT8 1303 aaKnown RBP9.87□□□□□ -0.83
PTPN9-202ENST00000561731 PPP2R2DQ66LE6 453 aa9.87□□□□□ -0.83
PTPN9-202ENST00000561731 PROCA1Q8NCQ7 364 aaPredicted RBP9.87□□□□□ -0.83
PTPN9-202ENST00000561731 ERBB4Q15303 1308 aa9.86□□□□□ -0.83
PTPN9-202ENST00000561731 FAM181BA6NEQ2 426 aa9.86□□□□□ -0.83
PTPN9-202ENST00000561731 SLC10A4Q96EP9 437 aa9.86□□□□□ -0.83
PTPN9-202ENST00000561731 TSEN34Q9BSV6 310 aaKnown RBP9.86□□□□□ -0.83
PTPN9-202ENST00000561731 CDV3Q9UKY7 258 aaKnown RBP9.86□□□□□ -0.83
PTPN9-202ENST00000561731 NR6A1Q15406 480 aa9.85□□□□□ -0.83
PTPN9-202ENST00000561731 ZBTB33Q86T24 672 aa9.85□□□□□ -0.83
PTPN9-202ENST00000561731 AP1G2O75843 785 aa9.84□□□□□ -0.83
PTPN9-202ENST00000561731 FBXO31Q5XUX0 539 aaPredicted RBP9.84□□□□□ -0.83
PTPN9-202ENST00000561731 PGPEP1Q9NXJ5 209 aa9.84□□□□□ -0.83
PTPN9-202ENST00000561731 PPP1R26Q5T8A7 1209 aaPredicted RBP9.83□□□□□ -0.84
PTPN9-202ENST00000561731 ZSCAN1Q8NBB4 408 aa9.83□□□□□ -0.84
PTPN9-202ENST00000561731 PNMA1Q8ND90 353 aa9.83□□□□□ -0.84
PTPN9-202ENST00000561731 SOS2Q07890 1332 aaPredicted RBP9.82□□□□□ -0.84
PTPN9-202ENST00000561731 PTK2Q05397 1052 aa9.82□□□□□ -0.84
PTPN9-202ENST00000561731 KCTD15Q96SI1 283 aaPredicted RBP9.82□□□□□ -0.84
PTPN9-202ENST00000561731 VSIG8P0DPA2 414 aa9.81□□□□□ -0.84
PTPN9-202ENST00000561731 DHX9Q08211 1270 aaKnown RBP9.81□□□□□ -0.84
PTPN9-202ENST00000561731 GPSM3Q9Y4H4 160 aa9.81□□□□□ -0.84
PTPN9-202ENST00000561731 DNMT3LQ9UJW3 386 aa9.8□□□□□ -0.84
PTPN9-202ENST00000561731 TTLL8A6PVC2 850 aa9.78□□□□□ -0.84
PTPN9-202ENST00000561731 PPFIA3O75145 1194 aa9.78□□□□□ -0.84
PTPN9-202ENST00000561731 USP17L8P0C7I0 530 aa9.78□□□□□ -0.84
PTPN9-202ENST00000561731 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.78□□□□□ -0.84
PTPN9-202ENST00000561731 Q6ZVU0 165 aa9.78□□□□□ -0.84
PTPN9-202ENST00000561731 LORP23490 312 aaPredicted RBP9.77□□□□□ -0.85
PTPN9-202ENST00000561731 CBLBQ13191 982 aa9.77□□□□□ -0.85
PTPN9-202ENST00000561731 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.85
PTPN9-202ENST00000561731 INTS6LQ5JSJ4 861 aaKnown RBP9.77□□□□□ -0.85
PTPN9-202ENST00000561731 ADAM32Q8TC27 787 aa9.77□□□□□ -0.85
PTPN9-202ENST00000561731 OCSTAMPQ9BR26 566 aa9.77□□□□□ -0.85
PTPN9-202ENST00000561731 SPINT1O43278 529 aa9.75□□□□□ -0.85
PTPN9-202ENST00000561731 RFC5P40937 340 aa9.75□□□□□ -0.85
PTPN9-202ENST00000561731 EPS8L1Q8TE68 723 aa9.75□□□□□ -0.85
PTPN9-202ENST00000561731 HMX1Q9NP08 348 aaPredicted RBP9.75□□□□□ -0.85
PTPN9-202ENST00000561731 DZIP3Q86Y13 1208 aaKnown RBP9.73□□□□□ -0.85
PTPN9-202ENST00000561731 PCMTD1Q96MG8 357 aaPredicted RBP9.73□□□□□ -0.85
PTPN9-202ENST00000561731 FIGNL2A6NMB9 653 aa9.72□□□□□ -0.85
PTPN9-202ENST00000561731 PTSQ03393 145 aa9.72□□□□□ -0.85
PTPN9-202ENST00000561731 GOPCQ9HD26 462 aa9.72□□□□□ -0.85
PTPN9-202ENST00000561731 RELBQ01201 579 aa9.71□□□□□ -0.86
PTPN9-202ENST00000561731 TMEM259Q4ZIN3 620 aa9.7□□□□□ -0.86
PTPN9-202ENST00000561731 AGBL1Q96MI9 1066 aa9.7□□□□□ -0.86
PTPN9-202ENST00000561731 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
PTPN9-202ENST00000561731 RAB15P59190 212 aa9.69□□□□□ -0.86
PTPN9-202ENST00000561731 ZNF784Q8NCA9 323 aaPredicted RBP9.68□□□□□ -0.86
PTPN9-202ENST00000561731 POLMQ9NP87 494 aaPredicted RBP9.68□□□□□ -0.86
PTPN9-202ENST00000561731 TMPRSS4Q9NRS4 437 aa9.68□□□□□ -0.86
PTPN9-202ENST00000561731 ERVH48-1M5A8F1 160 aa9.67□□□□□ -0.86
PTPN9-202ENST00000561731 CTSOP43234 321 aaPredicted RBP9.67□□□□□ -0.86
PTPN9-202ENST00000561731 NEUROD2Q15784 382 aa9.67□□□□□ -0.86
PTPN9-202ENST00000561731 CCDC155Q8N6L0 562 aa9.67□□□□□ -0.86
PTPN9-202ENST00000561731 TRIM52Q96A61 297 aa9.67□□□□□ -0.86
PTPN9-202ENST00000561731 INSM2Q96T92 566 aaPredicted RBP9.67□□□□□ -0.86
PTPN9-202ENST00000561731 TRIM34Q9BYJ4 488 aa9.67□□□□□ -0.86
PTPN9-202ENST00000561731 ESPNB1AK53 854 aa9.66□□□□□ -0.86
PTPN9-202ENST00000561731 ADH1AP07327 375 aa9.66□□□□□ -0.86
PTPN9-202ENST00000561731 SEPT12Q8IYM1 358 aa9.65□□□□□ -0.86
PTPN9-202ENST00000561731 ZNF395Q9H8N7 513 aaPredicted RBP9.65□□□□□ -0.86
PTPN9-202ENST00000561731 SLC35F4A4IF30 521 aa9.64□□□□□ -0.87
PTPN9-202ENST00000561731 NANOS1Q8WY41 292 aaKnown RBP9.64□□□□□ -0.87
PTPN9-202ENST00000561731 ZBBXA8MT70 800 aa9.63□□□□□ -0.87
PTPN9-202ENST00000561731 LILRA1O75019 489 aa9.63□□□□□ -0.87
PTPN9-202ENST00000561731 GPR161Q8N6U8 529 aaKnown RBP9.63□□□□□ -0.87
PTPN9-202ENST00000561731 IL27Q8NEV9 243 aa9.63□□□□□ -0.87
PTPN9-202ENST00000561731 RNF217Q8TC41 542 aa9.63□□□□□ -0.87
PTPN9-202ENST00000561731 ITGA6P23229 1130 aa9.62□□□□□ -0.87
PTPN9-202ENST00000561731 ADD1P35611 737 aaKnown RBP9.62□□□□□ -0.87
PTPN9-202ENST00000561731 PTGIRP43119 386 aa9.62□□□□□ -0.87
PTPN9-202ENST00000561731 CNTNAP3BQ96NU0 1288 aa9.62□□□□□ -0.87
PTPN9-202ENST00000561731 CNTNAP3Q9BZ76 1288 aa9.62□□□□□ -0.87
PTPN9-202ENST00000561731 COL25A1Q9BXS0 654 aaPredicted RBP9.61□□□□□ -0.87
PTPN9-202ENST00000561731 PCDHB9Q9Y5E1 797 aa9.61□□□□□ -0.87
PTPN9-202ENST00000561731 KRT76Q01546 638 aa9.6□□□□□ -0.87
PTPN9-202ENST00000561731 GJD4Q96KN9 370 aaPredicted RBP9.6□□□□□ -0.87
PTPN9-202ENST00000561731 CYLDQ9NQC7 956 aa9.6□□□□□ -0.87
PTPN9-202ENST00000561731 CDC14CA4D256 554 aa9.59□□□□□ -0.87
PTPN9-202ENST00000561731 FBXO45P0C2W1 286 aa9.59□□□□□ -0.87
PTPN9-202ENST00000561731 FOXD4L5Q5VV16 416 aaPredicted RBP9.59□□□□□ -0.87
PTPN9-202ENST00000561731 SV2AQ7L0J3 742 aa9.58□□□□□ -0.88
PTPN9-202ENST00000561731 CCDC125Q86Z20 511 aa9.58□□□□□ -0.88
PTPN9-202ENST00000561731 VWA5B2Q8N398 1253 aa9.58□□□□□ -0.88
PTPN9-202ENST00000561731 KDF1Q8NAX2 398 aaPredicted RBP9.58□□□□□ -0.88
PTPN9-202ENST00000561731 GIGYF1O75420 1035 aaPredicted RBP9.57□□□□□ -0.88
PTPN9-202ENST00000561731 LYSMD3Q7Z3D4 306 aa9.57□□□□□ -0.88
PTPN9-202ENST00000561731 SENP3-EIF4A1A0A087X0R7 540 aa9.56□□□□□ -0.88
PTPN9-202ENST00000561731 ZNF592Q92610 1267 aa9.56□□□□□ -0.88
PTPN9-202ENST00000561731 ATP5J2-PTCD1G3V325 749 aa9.55□□□□□ -0.88
PTPN9-202ENST00000561731 BRPF1P55201 1214 aaPredicted RBP9.55□□□□□ -0.88
PTPN9-202ENST00000561731 MCCD1P59942 119 aaPredicted RBP9.55□□□□□ -0.88
PTPN9-202ENST00000561731 RNFT1Q5M7Z0 435 aa9.55□□□□□ -0.88
PTPN9-202ENST00000561731 RNF20Q5VTR2 975 aa9.55□□□□□ -0.88
PTPN9-202ENST00000561731 BANK1Q8NDB2 785 aa9.55□□□□□ -0.88
PTPN9-202ENST00000561731 RNF144AP50876 292 aaPredicted RBP9.54□□□□□ -0.88
PTPN9-202ENST00000561731 NR1H3Q13133 447 aa9.54□□□□□ -0.88
PTPN9-202ENST00000561731 ZNF330Q9Y3S2 320 aaPredicted RBP9.54□□□□□ -0.88
PTPN9-202ENST00000561731 SOCS7O14512 581 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms