RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
PTPN9-202ENST00000561731 CHIC1Q5VXU3 224 aa27.11■■□□□ 1.93
PTPN9-202ENST00000561731 SENP3Q9H4L4 574 aaPredicted RBP24.24■■□□□ 1.47
PTPN9-202ENST00000561731 PHF23Q9BUL5 403 aaPredicted RBP23.9■■□□□ 1.42
PTPN9-202ENST00000561731 FOXD1Q16676 465 aa22.52■■□□□ 1.2
PTPN9-202ENST00000561731 PLPPR3Q6T4P5 718 aa21.75■■□□□ 1.07
PTPN9-202ENST00000561731 PPP6R1Q9UPN7 881 aa21.13■□□□□ 0.97
PTPN9-202ENST00000561731 PIAS4Q8N2W9 510 aaPredicted RBP21.12■□□□□ 0.97
PTPN9-202ENST00000561731 ADRA2BP18089 450 aa21.1■□□□□ 0.97
PTPN9-202ENST00000561731 MSH5O43196 834 aa21.08■□□□□ 0.97
PTPN9-202ENST00000561731 POTEDQ86YR6 584 aa20.28■□□□□ 0.84
PTPN9-202ENST00000561731 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
PTPN9-202ENST00000561731 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
PTPN9-202ENST00000561731 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
PTPN9-202ENST00000561731 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
PTPN9-202ENST00000561731 CNKSR2Q8WXI2 1034 aa18.69■□□□□ 0.58
PTPN9-202ENST00000561731 HOXD11P31277 338 aaPredicted RBP18.57■□□□□ 0.56
PTPN9-202ENST00000561731 RNF216Q9NWF9 866 aaPredicted RBP18.48■□□□□ 0.55
PTPN9-202ENST00000561731 DCAF8L1A6NGE4 600 aa18.45■□□□□ 0.54
PTPN9-202ENST00000561731 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
PTPN9-202ENST00000561731 NPM3O75607 178 aaKnown RBP18.1■□□□□ 0.49
PTPN9-202ENST00000561731 CACNB1Q02641 598 aaPredicted RBP17.99■□□□□ 0.47
PTPN9-202ENST00000561731 RNF39Q9H2S5 420 aa17.96■□□□□ 0.47
PTPN9-202ENST00000561731 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
PTPN9-202ENST00000561731 KCNA4P22459 653 aa17.87■□□□□ 0.45
PTPN9-202ENST00000561731 C1QBPQ07021 282 aaKnown RBP17.74■□□□□ 0.43
PTPN9-202ENST00000561731 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.72■□□□□ 0.43
PTPN9-202ENST00000561731 U3KPZ7 1027 aaPredicted RBP17.33■□□□□ 0.36
PTPN9-202ENST00000561731 SLC4A2P04920 1241 aa17.23■□□□□ 0.35
PTPN9-202ENST00000561731 CAPN15O75808 1086 aa17.04■□□□□ 0.32
PTPN9-202ENST00000561731 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
PTPN9-202ENST00000561731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.96■□□□□ 0.31
PTPN9-202ENST00000561731 APLP2Q06481 763 aa16.96■□□□□ 0.31
PTPN9-202ENST00000561731 HNRNPUL2Q1KMD3 747 aaKnown RBP16.96■□□□□ 0.31
PTPN9-202ENST00000561731 SLC4A1APQ9BWU0 796 aaKnown RBP16.94■□□□□ 0.3
PTPN9-202ENST00000561731 DSG3P32926 999 aa16.87■□□□□ 0.29
PTPN9-202ENST00000561731 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
PTPN9-202ENST00000561731 ZNF219Q9P2Y4 722 aaPredicted RBP16.79■□□□□ 0.28
PTPN9-202ENST00000561731 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
PTPN9-202ENST00000561731 TRHP20396 242 aaPredicted RBP16.78■□□□□ 0.28
PTPN9-202ENST00000561731 FOXD4L1Q9NU39 408 aa16.68■□□□□ 0.26
PTPN9-202ENST00000561731 ABCB7O75027 752 aa16.62■□□□□ 0.25
PTPN9-202ENST00000561731 ZBTB22O15209 634 aa16.4■□□□□ 0.22
PTPN9-202ENST00000561731 POLA2Q14181 598 aa16.35■□□□□ 0.21
PTPN9-202ENST00000561731 ATF5Q9Y2D1 282 aaPredicted RBP16.3■□□□□ 0.2
PTPN9-202ENST00000561731 ATXN8OSP0DMR3 200 aa16.15■□□□□ 0.18
PTPN9-202ENST00000561731 RBM42Q9BTD8 480 aaKnown RBP16.15■□□□□ 0.18
PTPN9-202ENST00000561731 ZBTB12Q9Y330 459 aaPredicted RBP16.1■□□□□ 0.17
PTPN9-202ENST00000561731 POTEHQ6S545 545 aa15.94■□□□□ 0.14
PTPN9-202ENST00000561731 OSCARQ8IYS5 282 aa15.83■□□□□ 0.12
PTPN9-202ENST00000561731 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
PTPN9-202ENST00000561731 AKT1S1Q96B36 256 aa15.79■□□□□ 0.12
PTPN9-202ENST00000561731 FBLN2P98095 1184 aa15.76■□□□□ 0.11
PTPN9-202ENST00000561731 CHRDL2Q6WN34 429 aa15.7■□□□□ 0.1
PTPN9-202ENST00000561731 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
PTPN9-202ENST00000561731 REM2Q8IYK8 340 aaPredicted RBP15.61■□□□□ 0.09
PTPN9-202ENST00000561731 SPDYE2BA6NHP3 402 aa15.59■□□□□ 0.09
PTPN9-202ENST00000561731 SPDYE6P0CI01 402 aa15.59■□□□□ 0.09
PTPN9-202ENST00000561731 SPDYE2Q495Y8 402 aa15.59■□□□□ 0.09
PTPN9-202ENST00000561731 MKRN4PQ13434 485 aaPredicted RBP15.58■□□□□ 0.08
PTPN9-202ENST00000561731 PITPNM1O00562 1244 aa15.44■□□□□ 0.06
PTPN9-202ENST00000561731 ZNF692Q9BU19 519 aaPredicted RBP15.41■□□□□ 0.06
PTPN9-202ENST00000561731 SSUH2Q9Y2M2 353 aa15.36■□□□□ 0.05
PTPN9-202ENST00000561731 PIP4P2Q8N4L2 257 aa15.35■□□□□ 0.05
PTPN9-202ENST00000561731 FXR2P51116 673 aaKnown RBP eCLIP15.28■□□□□ 0.04
PTPN9-202ENST00000561731 SPDYE1Q8NFV5 336 aaPredicted RBP15.28■□□□□ 0.04
PTPN9-202ENST00000561731 CLEC11AQ9Y240 323 aa15.24■□□□□ 0.03
PTPN9-202ENST00000561731 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
PTPN9-202ENST00000561731 PRKAR2AP13861 404 aaKnown RBP15.06■□□□□ 0
PTPN9-202ENST00000561731 HAX1O00165 279 aa15.05■□□□□ -0
PTPN9-202ENST00000561731 PRR29P0C7W0 189 aa15.01□□□□□ -0.01
PTPN9-202ENST00000561731 SP7Q8TDD2 431 aaPredicted RBP15.01□□□□□ -0.01
PTPN9-202ENST00000561731 SPDYE4A6NLX3 237 aa14.96□□□□□ -0.01
PTPN9-202ENST00000561731 CHADLQ6NUI6 762 aa14.9□□□□□ -0.02
PTPN9-202ENST00000561731 STAG3Q9UJ98 1225 aa14.84□□□□□ -0.03
PTPN9-202ENST00000561731 EVX2Q03828 476 aa14.8□□□□□ -0.04
PTPN9-202ENST00000561731 C19orf67A6NJJ6 358 aa14.78□□□□□ -0.04
PTPN9-202ENST00000561731 FARP1Q9Y4F1 1045 aaPredicted RBP14.72□□□□□ -0.05
PTPN9-202ENST00000561731 CREBZFQ9NS37 354 aa14.63□□□□□ -0.07
PTPN9-202ENST00000561731 CD44P16070 742 aaKnown RBP14.6□□□□□ -0.07
PTPN9-202ENST00000561731 PROM2Q8N271 834 aa14.59□□□□□ -0.07
PTPN9-202ENST00000561731 GABBR2O75899 941 aa14.53□□□□□ -0.08
PTPN9-202ENST00000561731 NPM1P06748 294 aaKnown RBP eCLIP14.43□□□□□ -0.1
PTPN9-202ENST00000561731 ZRANB1Q9UGI0 708 aa14.42□□□□□ -0.1
PTPN9-202ENST00000561731 CLCN6P51797 869 aa14.41□□□□□ -0.1
PTPN9-202ENST00000561731 PAK3O75914 559 aaPredicted RBP14.38□□□□□ -0.11
PTPN9-202ENST00000561731 MNX1P50219 401 aaPredicted RBP14.38□□□□□ -0.11
PTPN9-202ENST00000561731 ZNF579Q8NAF0 562 aaKnown RBP14.38□□□□□ -0.11
PTPN9-202ENST00000561731 FKBP8Q14318 412 aa14.36□□□□□ -0.11
PTPN9-202ENST00000561731 PLEKHG5O94827 1062 aa14.3□□□□□ -0.12
PTPN9-202ENST00000561731 MIER1Q8N108 512 aa14.26□□□□□ -0.13
PTPN9-202ENST00000561731 DCBLD2Q96PD2 775 aa14.21□□□□□ -0.13
PTPN9-202ENST00000561731 PHF12Q96QT6 1004 aa14.21□□□□□ -0.13
PTPN9-202ENST00000561731 PLCD3Q8N3E9 789 aa14.19□□□□□ -0.14
PTPN9-202ENST00000561731 POTEIP0CG38 1075 aa14.18□□□□□ -0.14
PTPN9-202ENST00000561731 GALR2O43603 387 aaPredicted RBP14.17□□□□□ -0.14
PTPN9-202ENST00000561731 TSPYL2Q9H2G4 693 aaPredicted RBP14.14□□□□□ -0.15
PTPN9-202ENST00000561731 ZBTB47Q9UFB7 747 aaPredicted RBP14.1□□□□□ -0.15
PTPN9-202ENST00000561731 LHX8Q68G74 356 aa14.08□□□□□ -0.16
PTPN9-202ENST00000561731 FBXO3Q9UK99 471 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms