RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 CCDC9Q9Y3X0 531 aaKnown RBP19.31■□□□□ 0.68
TPM1-230ENST00000561266 COL5A2P05997 1499 aaPredicted RBP19.3■□□□□ 0.68
TPM1-230ENST00000561266 KCNH5Q8NCM2 988 aa19.3■□□□□ 0.68
TPM1-230ENST00000561266 PANK3Q9H999 370 aa19.29■□□□□ 0.68
TPM1-230ENST00000561266 SPATA31A1Q5TZJ5 1347 aa19.28■□□□□ 0.68
TPM1-230ENST00000561266 ONECUT3O60422 494 aaPredicted RBP19.28■□□□□ 0.68
TPM1-230ENST00000561266 FAM98CQ17RN3 349 aaKnown RBP19.27■□□□□ 0.68
TPM1-230ENST00000561266 EVA1CP58658 441 aa19.26■□□□□ 0.67
TPM1-230ENST00000561266 SEPT12Q8IYM1 358 aa19.26■□□□□ 0.67
TPM1-230ENST00000561266 COG3Q96JB2 828 aa19.26■□□□□ 0.67
TPM1-230ENST00000561266 THSD7AQ9UPZ6 1657 aa19.25■□□□□ 0.67
TPM1-230ENST00000561266 USP35Q9P2H5 1018 aa19.25■□□□□ 0.67
TPM1-230ENST00000561266 WASHC2AQ641Q2 1341 aa19.25■□□□□ 0.67
TPM1-230ENST00000561266 MAP3K19Q56UN5 1328 aa19.24■□□□□ 0.67
TPM1-230ENST00000561266 CCDC7Q96M83 1385 aa19.23■□□□□ 0.67
TPM1-230ENST00000561266 PEAK1Q9H792 1746 aa19.22■□□□□ 0.67
TPM1-230ENST00000561266 RRS1Q15050 365 aaKnown RBP19.22■□□□□ 0.67
TPM1-230ENST00000561266 ABCC6O95255 1503 aa19.21■□□□□ 0.67
TPM1-230ENST00000561266 UPF1Q92900 1129 aaKnown RBP eCLIP19.21■□□□□ 0.67
TPM1-230ENST00000561266 ANKRD26Q9UPS8 1709 aa19.21■□□□□ 0.67
TPM1-230ENST00000561266 RGPD2P0DJD1 1756 aa19.21■□□□□ 0.67
TPM1-230ENST00000561266 EP400Q96L91 3159 aa19.2■□□□□ 0.66
TPM1-230ENST00000561266 CRB1P82279 1406 aa19.2■□□□□ 0.66
TPM1-230ENST00000561266 MAP2P11137 1827 aaKnown RBP19.2■□□□□ 0.66
TPM1-230ENST00000561266 WDR17Q8IZU2 1322 aa19.2■□□□□ 0.66
TPM1-230ENST00000561266 WNK3Q9BYP7 1800 aa19.19■□□□□ 0.66
TPM1-230ENST00000561266 FAM182BQ5T319 152 aa19.18■□□□□ 0.66
TPM1-230ENST00000561266 TOM1L2Q6ZVM7 507 aa19.18■□□□□ 0.66
TPM1-230ENST00000561266 TCP11L2Q8N4U5 519 aa19.18■□□□□ 0.66
TPM1-230ENST00000561266 IP6K1Q92551 441 aa19.18■□□□□ 0.66
TPM1-230ENST00000561266 CGNL1Q0VF96 1302 aa19.18■□□□□ 0.66
TPM1-230ENST00000561266 HOXC9P31274 260 aa19.17■□□□□ 0.66
TPM1-230ENST00000561266 BARGINQ6ZT62 677 aa19.17■□□□□ 0.66
TPM1-230ENST00000561266 A0A0G2JS52 829 aa19.16■□□□□ 0.66
TPM1-230ENST00000561266 PER1O15534 1290 aaPredicted RBP19.16■□□□□ 0.66
TPM1-230ENST00000561266 MYT1Q01538 1121 aa19.16■□□□□ 0.66
TPM1-230ENST00000561266 ANKRD24Q8TF21 1146 aa19.16■□□□□ 0.66
TPM1-230ENST00000561266 ERBB3P21860 1342 aa19.16■□□□□ 0.66
TPM1-230ENST00000561266 KRT27Q7Z3Y8 459 aa19.15■□□□□ 0.66
TPM1-230ENST00000561266 LTV1Q96GA3 475 aaPredicted RBP19.15■□□□□ 0.66
TPM1-230ENST00000561266 EMILIN1Q9Y6C2 1016 aa19.15■□□□□ 0.66
TPM1-230ENST00000561266 PARP4Q9UKK3 1724 aaKnown RBP19.14■□□□□ 0.66
TPM1-230ENST00000561266 CSB-PGBD3P0DP91 1061 aa19.14■□□□□ 0.65
TPM1-230ENST00000561266 AMER1Q5JTC6 1135 aaPredicted RBP19.14■□□□□ 0.65
TPM1-230ENST00000561266 CARD10Q9BWT7 1032 aa19.14■□□□□ 0.65
TPM1-230ENST00000561266 TNNT2P45379 298 aaPredicted RBP19.13■□□□□ 0.65
TPM1-230ENST00000561266 AMPHP49418 695 aa19.13■□□□□ 0.65
TPM1-230ENST00000561266 BLMP54132 1417 aaPredicted RBP19.13■□□□□ 0.65
TPM1-230ENST00000561266 LRRC37A3O60309 1634 aa19.12■□□□□ 0.65
TPM1-230ENST00000561266 DISP2A7MBM2 1401 aa19.12■□□□□ 0.65
TPM1-230ENST00000561266 HSP90AB2PQ58FF8 381 aa19.12■□□□□ 0.65
TPM1-230ENST00000561266 THRAP3Q9Y2W1 955 aaKnown RBP19.12■□□□□ 0.65
TPM1-230ENST00000561266 POLKQ9UBT6 870 aa19.11■□□□□ 0.65
TPM1-230ENST00000561266 FAM208AQ9UK61 1670 aaKnown RBP19.11■□□□□ 0.65
TPM1-230ENST00000561266 NLRP2Q9NX02 1062 aa19.1■□□□□ 0.65
TPM1-230ENST00000561266 KNSTRNQ9Y448 316 aa19.1■□□□□ 0.65
TPM1-230ENST00000561266 RTL1A6NKG5 1358 aa19.09■□□□□ 0.65
TPM1-230ENST00000561266 INSRP06213 1382 aa19.07■□□□□ 0.64
TPM1-230ENST00000561266 NBPF6Q5VWK0 638 aa19.07■□□□□ 0.64
TPM1-230ENST00000561266 NBPF4Q96M43 638 aa19.07■□□□□ 0.64
TPM1-230ENST00000561266 NSD2O96028 1365 aa19.06■□□□□ 0.64
TPM1-230ENST00000561266 FLT4P35916 1363 aa19.06■□□□□ 0.64
TPM1-230ENST00000561266 PPM1GO15355 546 aaPredicted RBP19.06■□□□□ 0.64
TPM1-230ENST00000561266 CC2D1BQ5T0F9 858 aaKnown RBP19.05■□□□□ 0.64
TPM1-230ENST00000561266 MORC1Q86VD1 984 aa19.05■□□□□ 0.64
TPM1-230ENST00000561266 USHBP1Q8N6Y0 703 aa19.05■□□□□ 0.64
TPM1-230ENST00000561266 CNGB1Q14028 1251 aaPredicted RBP19.04■□□□□ 0.64
TPM1-230ENST00000561266 MARCH10Q8NA82 808 aaPredicted RBP19.04■□□□□ 0.64
TPM1-230ENST00000561266 KIF24Q5T7B8 1368 aa19.04■□□□□ 0.64
TPM1-230ENST00000561266 SBF2Q86WG5 1849 aa19.03■□□□□ 0.64
TPM1-230ENST00000561266 PDE3BQ13370 1112 aa19.03■□□□□ 0.64
TPM1-230ENST00000561266 DDB1Q16531 1140 aa19.02■□□□□ 0.64
TPM1-230ENST00000561266 TNS1Q9HBL0 1735 aaKnown RBP19.02■□□□□ 0.63
TPM1-230ENST00000561266 SMG6Q86US8 1419 aaKnown RBP19.01■□□□□ 0.63
TPM1-230ENST00000561266 MEGF6O75095 1541 aa19.01■□□□□ 0.63
TPM1-230ENST00000561266 SHANK3Q9BYB0 1731 aa19.01■□□□□ 0.63
TPM1-230ENST00000561266 IL2RBP14784 551 aa19■□□□□ 0.63
TPM1-230ENST00000561266 PTF1AQ7RTS3 328 aa19■□□□□ 0.63
TPM1-230ENST00000561266 DEFB132Q7Z7B7 95 aa19■□□□□ 0.63
TPM1-230ENST00000561266 EIF4A2Q14240 407 aaKnown RBP18.99■□□□□ 0.63
TPM1-230ENST00000561266 CDCA7Q9BWT1 371 aaPredicted RBP18.99■□□□□ 0.63
TPM1-230ENST00000561266 TNS2Q63HR2 1409 aa18.99■□□□□ 0.63
TPM1-230ENST00000561266 NPC1L1Q9UHC9 1359 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 RGPD1P0DJD0 1748 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 EXOC5O00471 708 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 TRIM37O94972 964 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 ZEB1P37275 1124 aaPredicted RBP18.98■□□□□ 0.63
TPM1-230ENST00000561266 FAM196AQ6ZSG2 479 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 EYA1Q99502 592 aa18.98■□□□□ 0.63
TPM1-230ENST00000561266 NCAPD2Q15021 1401 aa18.97■□□□□ 0.63
TPM1-230ENST00000561266 CCDC125Q86Z20 511 aa18.95■□□□□ 0.62
TPM1-230ENST00000561266 OVOS2A0A0G2JMS6 1433 aa18.94■□□□□ 0.62
TPM1-230ENST00000561266 MTHFSP49914 203 aa18.94■□□□□ 0.62
TPM1-230ENST00000561266 KAT6BQ8WYB5 2073 aa18.94■□□□□ 0.62
TPM1-230ENST00000561266 DDX10Q13206 875 aaKnown RBP18.92■□□□□ 0.62
TPM1-230ENST00000561266 KCNQ2O43526 872 aa18.91■□□□□ 0.62
TPM1-230ENST00000561266 IL13P35225 146 aa18.91■□□□□ 0.62
TPM1-230ENST00000561266 EN1Q05925 392 aaPredicted RBP18.91■□□□□ 0.62
TPM1-230ENST00000561266 DDX54Q8TDD1 881 aaKnown RBP18.91■□□□□ 0.62
TPM1-230ENST00000561266 BCL9O00512 1426 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms