RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SPATA31A5Q5VU36 1347 aa12.94□□□□□ -0.34
LDLR-211ENST00000560173 SPATA31A7Q8IWB4 1347 aa12.94□□□□□ -0.34
LDLR-211ENST00000560173 COG3Q96JB2 828 aa12.94□□□□□ -0.34
LDLR-211ENST00000560173 GGNBP2Q9H3C7 697 aa12.94□□□□□ -0.34
LDLR-211ENST00000560173 CCDC9Q9Y3X0 531 aaKnown RBP12.94□□□□□ -0.34
LDLR-211ENST00000560173 STRN4Q9NRL3 753 aa12.93□□□□□ -0.34
LDLR-211ENST00000560173 CCDC7Q96M83 1385 aa12.93□□□□□ -0.34
LDLR-211ENST00000560173 BLMP54132 1417 aaPredicted RBP12.92□□□□□ -0.34
LDLR-211ENST00000560173 LARP1Q6PKG0 1096 aaKnown RBP12.92□□□□□ -0.34
LDLR-211ENST00000560173 PANK3Q9H999 370 aa12.92□□□□□ -0.34
LDLR-211ENST00000560173 AXIN2Q9Y2T1 843 aa12.92□□□□□ -0.34
LDLR-211ENST00000560173 CGNL1Q0VF96 1302 aa12.91□□□□□ -0.34
LDLR-211ENST00000560173 SPATA31A1Q5TZJ5 1347 aa12.91□□□□□ -0.34
LDLR-211ENST00000560173 WASHC2AQ641Q2 1341 aa12.91□□□□□ -0.34
LDLR-211ENST00000560173 ONECUT3O60422 494 aaPredicted RBP12.91□□□□□ -0.34
LDLR-211ENST00000560173 EVA1CP58658 441 aa12.91□□□□□ -0.34
LDLR-211ENST00000560173 LTN1O94822 1766 aa12.91□□□□□ -0.34
LDLR-211ENST00000560173 THSD7AQ9UPZ6 1657 aa12.89□□□□□ -0.35
LDLR-211ENST00000560173 MAP3K19Q56UN5 1328 aa12.89□□□□□ -0.35
LDLR-211ENST00000560173 WDR17Q8IZU2 1322 aa12.89□□□□□ -0.35
LDLR-211ENST00000560173 CRB1P82279 1406 aa12.89□□□□□ -0.35
LDLR-211ENST00000560173 FAM98CQ17RN3 349 aaKnown RBP12.89□□□□□ -0.35
LDLR-211ENST00000560173 SEPT12Q8IYM1 358 aa12.89□□□□□ -0.35
LDLR-211ENST00000560173 FBLN1P23142 703 aa12.88□□□□□ -0.35
LDLR-211ENST00000560173 DEFB132Q7Z7B7 95 aa12.88□□□□□ -0.35
LDLR-211ENST00000560173 RTL1A6NKG5 1358 aa12.88□□□□□ -0.35
LDLR-211ENST00000560173 RGPD5Q99666 1765 aa12.88□□□□□ -0.35
LDLR-211ENST00000560173 NSD2O96028 1365 aa12.87□□□□□ -0.35
LDLR-211ENST00000560173 TCP11L2Q8N4U5 519 aa12.87□□□□□ -0.35
LDLR-211ENST00000560173 IP6K1Q92551 441 aa12.87□□□□□ -0.35
LDLR-211ENST00000560173 ANKRD26Q9UPS8 1709 aa12.87□□□□□ -0.35
LDLR-211ENST00000560173 ERBB3P21860 1342 aa12.87□□□□□ -0.35
LDLR-211ENST00000560173 RRS1Q15050 365 aaKnown RBP12.86□□□□□ -0.35
LDLR-211ENST00000560173 BARGINQ6ZT62 677 aa12.86□□□□□ -0.35
LDLR-211ENST00000560173 TOM1L2Q6ZVM7 507 aa12.86□□□□□ -0.35
LDLR-211ENST00000560173 USP35Q9P2H5 1018 aa12.86□□□□□ -0.35
LDLR-211ENST00000560173 CSB-PGBD3P0DP91 1061 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 HOXC9P31274 260 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 ANKRD24Q8TF21 1146 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 CARD10Q9BWT7 1032 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 THRAP3Q9Y2W1 955 aaKnown RBP12.85□□□□□ -0.35
LDLR-211ENST00000560173 KNSTRNQ9Y448 316 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 PEAK1Q9H792 1746 aa12.85□□□□□ -0.35
LDLR-211ENST00000560173 KIF24Q5T7B8 1368 aa12.84□□□□□ -0.35
LDLR-211ENST00000560173 A0A0G2JS52 829 aa12.84□□□□□ -0.35
LDLR-211ENST00000560173 PER1O15534 1290 aaPredicted RBP12.84□□□□□ -0.35
LDLR-211ENST00000560173 AMPHP49418 695 aa12.84□□□□□ -0.35
LDLR-211ENST00000560173 MYT1Q01538 1121 aa12.84□□□□□ -0.35
LDLR-211ENST00000560173 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
LDLR-211ENST00000560173 FLT4P35916 1363 aa12.83□□□□□ -0.36
LDLR-211ENST00000560173 SF3B2Q13435 895 aaKnown RBP12.83□□□□□ -0.36
LDLR-211ENST00000560173 KRT27Q7Z3Y8 459 aa12.83□□□□□ -0.36
LDLR-211ENST00000560173 DISP2A7MBM2 1401 aa12.82□□□□□ -0.36
LDLR-211ENST00000560173 PSDA5PKW4 1024 aaPredicted RBP12.82□□□□□ -0.36
LDLR-211ENST00000560173 EMILIN1Q9Y6C2 1016 aa12.82□□□□□ -0.36
LDLR-211ENST00000560173 WNK3Q9BYP7 1800 aa12.82□□□□□ -0.36
LDLR-211ENST00000560173 FAM208AQ9UK61 1670 aaKnown RBP12.82□□□□□ -0.36
LDLR-211ENST00000560173 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
LDLR-211ENST00000560173 INSRP06213 1382 aa12.81□□□□□ -0.36
LDLR-211ENST00000560173 LTV1Q96GA3 475 aaPredicted RBP12.81□□□□□ -0.36
LDLR-211ENST00000560173 NLRP2Q9NX02 1062 aa12.81□□□□□ -0.36
LDLR-211ENST00000560173 SMG6Q86US8 1419 aaKnown RBP12.8□□□□□ -0.36
LDLR-211ENST00000560173 TNNT2P45379 298 aaPredicted RBP12.8□□□□□ -0.36
LDLR-211ENST00000560173 HSP90AB2PQ58FF8 381 aa12.8□□□□□ -0.36
LDLR-211ENST00000560173 MORC1Q86VD1 984 aa12.8□□□□□ -0.36
LDLR-211ENST00000560173 CDCA7Q9BWT1 371 aaPredicted RBP12.8□□□□□ -0.36
LDLR-211ENST00000560173 POLKQ9UBT6 870 aa12.8□□□□□ -0.36
LDLR-211ENST00000560173 LRRC37A3O60309 1634 aa12.8□□□□□ -0.36
LDLR-211ENST00000560173 NPC1L1Q9UHC9 1359 aa12.8□□□□□ -0.36
LDLR-211ENST00000560173 RGPD1P0DJD0 1748 aa12.79□□□□□ -0.36
LDLR-211ENST00000560173 MAP2P11137 1827 aaKnown RBP12.78□□□□□ -0.36
LDLR-211ENST00000560173 PPM1GO15355 546 aaPredicted RBP12.77□□□□□ -0.37
LDLR-211ENST00000560173 FAM182BQ5T319 152 aa12.77□□□□□ -0.37
LDLR-211ENST00000560173 TNS2Q63HR2 1409 aa12.77□□□□□ -0.37
LDLR-211ENST00000560173 PDE3BQ13370 1112 aa12.76□□□□□ -0.37
LDLR-211ENST00000560173 DDB1Q16531 1140 aa12.76□□□□□ -0.37
LDLR-211ENST00000560173 CC2D1BQ5T0F9 858 aaKnown RBP12.76□□□□□ -0.37
LDLR-211ENST00000560173 NBPF6Q5VWK0 638 aa12.76□□□□□ -0.37
LDLR-211ENST00000560173 NBPF4Q96M43 638 aa12.76□□□□□ -0.37
LDLR-211ENST00000560173 RGPD2P0DJD1 1756 aa12.76□□□□□ -0.37
LDLR-211ENST00000560173 IL2RBP14784 551 aa12.75□□□□□ -0.37
LDLR-211ENST00000560173 BAG6P46379 1132 aa12.75□□□□□ -0.37
LDLR-211ENST00000560173 NCAPD2Q15021 1401 aa12.75□□□□□ -0.37
LDLR-211ENST00000560173 TNS1Q9HBL0 1735 aaKnown RBP12.74□□□□□ -0.37
LDLR-211ENST00000560173 MEGF6O75095 1541 aa12.74□□□□□ -0.37
LDLR-211ENST00000560173 OVOS2A0A0G2JMS6 1433 aa12.74□□□□□ -0.37
LDLR-211ENST00000560173 FAM196AQ6ZSG2 479 aa12.74□□□□□ -0.37
LDLR-211ENST00000560173 USHBP1Q8N6Y0 703 aa12.74□□□□□ -0.37
LDLR-211ENST00000560173 EIF4A2Q14240 407 aaKnown RBP12.73□□□□□ -0.37
LDLR-211ENST00000560173 MARCH10Q8NA82 808 aaPredicted RBP12.73□□□□□ -0.37
LDLR-211ENST00000560173 BCL9O00512 1426 aa12.72□□□□□ -0.37
LDLR-211ENST00000560173 EXOC5O00471 708 aa12.72□□□□□ -0.37
LDLR-211ENST00000560173 YY1P25490 414 aa12.72□□□□□ -0.37
LDLR-211ENST00000560173 R3HDM1Q15032 1099 aaKnown RBP12.71□□□□□ -0.37
LDLR-211ENST00000560173 EYA1Q99502 592 aa12.71□□□□□ -0.37
LDLR-211ENST00000560173 MTHFSP49914 203 aa12.7□□□□□ -0.38
LDLR-211ENST00000560173 EN1Q05925 392 aaPredicted RBP12.7□□□□□ -0.38
LDLR-211ENST00000560173 CNGB1Q14028 1251 aaPredicted RBP12.7□□□□□ -0.38
LDLR-211ENST00000560173 IGSF1Q8N6C5 1336 aa12.69□□□□□ -0.38
LDLR-211ENST00000560173 TRIM37O94972 964 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms