RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NRAPQ86VF7 1730 aa13.65□□□□□ -0.22
USP3-216ENST00000559873 RRS1Q15050 365 aaKnown RBP13.65□□□□□ -0.22
USP3-216ENST00000559873 TRPC5Q9UL62 973 aaPredicted RBP13.65□□□□□ -0.22
USP3-216ENST00000559873 COL5A2P05997 1499 aaPredicted RBP13.65□□□□□ -0.22
USP3-216ENST00000559873 BCL9LQ86UU0 1499 aa13.64□□□□□ -0.23
USP3-216ENST00000559873 CDK12Q9NYV4 1490 aaPredicted RBP13.64□□□□□ -0.23
USP3-216ENST00000559873 EVA1CP58658 441 aa13.64□□□□□ -0.23
USP3-216ENST00000559873 CNGB1Q14028 1251 aaPredicted RBP13.64□□□□□ -0.23
USP3-216ENST00000559873 IP6K1Q92551 441 aa13.64□□□□□ -0.23
USP3-216ENST00000559873 COL18A1P39060 1754 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 CAMTA1Q9Y6Y1 1673 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 PARD3Q8TEW0 1356 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 CSB-PGBD3P0DP91 1061 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 HOXC9P31274 260 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 RALBP1Q15311 655 aa13.63□□□□□ -0.23
USP3-216ENST00000559873 FAM208AQ9UK61 1670 aaKnown RBP13.63□□□□□ -0.23
USP3-216ENST00000559873 INSRP06213 1382 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 PPM1GO15355 546 aaPredicted RBP13.62□□□□□ -0.23
USP3-216ENST00000559873 VPS72Q15906 364 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 STRN4Q9NRL3 753 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 CCDC9Q9Y3X0 531 aaKnown RBP13.62□□□□□ -0.23
USP3-216ENST00000559873 EMILIN1Q9Y6C2 1016 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 ATRNO75882 1429 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 ERBB3P21860 1342 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 WDR17Q8IZU2 1322 aa13.62□□□□□ -0.23
USP3-216ENST00000559873 POLKQ9UBT6 870 aa13.61□□□□□ -0.23
USP3-216ENST00000559873 CRB1P82279 1406 aa13.61□□□□□ -0.23
USP3-216ENST00000559873 PEAK1Q9H792 1746 aa13.61□□□□□ -0.23
USP3-216ENST00000559873 MAP2P11137 1827 aaKnown RBP13.6□□□□□ -0.23
USP3-216ENST00000559873 TOM1L2Q6ZVM7 507 aa13.6□□□□□ -0.23
USP3-216ENST00000559873 ANKRD24Q8TF21 1146 aa13.6□□□□□ -0.23
USP3-216ENST00000559873 FBLN1P23142 703 aa13.59□□□□□ -0.23
USP3-216ENST00000559873 RBM6P78332 1123 aaKnown RBP13.59□□□□□ -0.23
USP3-216ENST00000559873 CFAP53Q96M91 514 aa13.59□□□□□ -0.23
USP3-216ENST00000559873 QTRT2Q9H974 415 aaKnown RBP13.59□□□□□ -0.23
USP3-216ENST00000559873 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
USP3-216ENST00000559873 ANP32CO43423 234 aa13.58□□□□□ -0.24
USP3-216ENST00000559873 SPATA31A5Q5VU36 1347 aa13.58□□□□□ -0.24
USP3-216ENST00000559873 SPATA31A7Q8IWB4 1347 aa13.58□□□□□ -0.24
USP3-216ENST00000559873 MYBBP1AQ9BQG0 1328 aaKnown RBP13.58□□□□□ -0.24
USP3-216ENST00000559873 RXRBP28702 533 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 PPP2R1AP30153 589 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 MTHFSP49914 203 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 HSP90AB2PQ58FF8 381 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 LARP1Q6PKG0 1096 aaKnown RBP13.57□□□□□ -0.24
USP3-216ENST00000559873 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
USP3-216ENST00000559873 GJD4Q96KN9 370 aaPredicted RBP13.57□□□□□ -0.24
USP3-216ENST00000559873 RGS17Q9UGC6 210 aaPredicted RBP13.57□□□□□ -0.24
USP3-216ENST00000559873 RGPD5Q99666 1765 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 SPATA31A1Q5TZJ5 1347 aa13.57□□□□□ -0.24
USP3-216ENST00000559873 TCP11L2Q8N4U5 519 aa13.56□□□□□ -0.24
USP3-216ENST00000559873 PRKRIP1Q9H875 184 aaPredicted RBP13.56□□□□□ -0.24
USP3-216ENST00000559873 NLRP2Q9NX02 1062 aa13.56□□□□□ -0.24
USP3-216ENST00000559873 THRAP3Q9Y2W1 955 aaKnown RBP13.56□□□□□ -0.24
USP3-216ENST00000559873 GLI3P10071 1580 aa13.55□□□□□ -0.24
USP3-216ENST00000559873 CDCA7Q9BWT1 371 aaPredicted RBP13.55□□□□□ -0.24
USP3-216ENST00000559873 CARD10Q9BWT7 1032 aa13.55□□□□□ -0.24
USP3-216ENST00000559873 USP35Q9P2H5 1018 aa13.54□□□□□ -0.24
USP3-216ENST00000559873 A0A0G2JS52 829 aa13.53□□□□□ -0.24
USP3-216ENST00000559873 DIAPH1O60610 1272 aaKnown RBP13.53□□□□□ -0.24
USP3-216ENST00000559873 MYT1Q01538 1121 aa13.53□□□□□ -0.24
USP3-216ENST00000559873 EIF4A2Q14240 407 aaKnown RBP13.53□□□□□ -0.24
USP3-216ENST00000559873 POTEAQ6S8J7 498 aa13.53□□□□□ -0.24
USP3-216ENST00000559873 BARGINQ6ZT62 677 aa13.53□□□□□ -0.24
USP3-216ENST00000559873 NUDCQ9Y266 331 aa13.52□□□□□ -0.25
USP3-216ENST00000559873 COL3A1P02461 1466 aaPredicted RBP13.52□□□□□ -0.25
USP3-216ENST00000559873 WNK3Q9BYP7 1800 aa13.51□□□□□ -0.25
USP3-216ENST00000559873 PLEKHG2Q9H7P9 1386 aa13.51□□□□□ -0.25
USP3-216ENST00000559873 FAM98CQ17RN3 349 aaKnown RBP13.51□□□□□ -0.25
USP3-216ENST00000559873 THSD7AQ9UPZ6 1657 aa13.5□□□□□ -0.25
USP3-216ENST00000559873 RGS12O14924 1447 aa13.5□□□□□ -0.25
USP3-216ENST00000559873 IGSF1Q8N6C5 1336 aa13.5□□□□□ -0.25
USP3-216ENST00000559873 IL2RBP14784 551 aa13.5□□□□□ -0.25
USP3-216ENST00000559873 RAPGEF4Q8WZA2 1011 aa13.5□□□□□ -0.25
USP3-216ENST00000559873 PARP4Q9UKK3 1724 aaKnown RBP13.5□□□□□ -0.25
USP3-216ENST00000559873 NCAPD2Q15021 1401 aa13.49□□□□□ -0.25
USP3-216ENST00000559873 IL13P35225 146 aa13.49□□□□□ -0.25
USP3-216ENST00000559873 NBPF6Q5VWK0 638 aa13.49□□□□□ -0.25
USP3-216ENST00000559873 NBPF4Q96M43 638 aa13.49□□□□□ -0.25
USP3-216ENST00000559873 DISP2A7MBM2 1401 aa13.48□□□□□ -0.25
USP3-216ENST00000559873 ONECUT3O60422 494 aaPredicted RBP13.48□□□□□ -0.25
USP3-216ENST00000559873 EYA1Q99502 592 aa13.48□□□□□ -0.25
USP3-216ENST00000559873 TNS2Q63HR2 1409 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 RGPD1P0DJD0 1748 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 LRRC37A3O60309 1634 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 U2SURPO15042 1029 aaKnown RBP13.47□□□□□ -0.25
USP3-216ENST00000559873 TATP17735 454 aaPredicted RBP13.47□□□□□ -0.25
USP3-216ENST00000559873 DDB1Q16531 1140 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 DIEXFQ68CQ4 756 aaKnown RBP13.47□□□□□ -0.25
USP3-216ENST00000559873 SEPT12Q8IYM1 358 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 USHBP1Q8N6Y0 703 aa13.47□□□□□ -0.25
USP3-216ENST00000559873 KDRP35968 1356 aa13.46□□□□□ -0.25
USP3-216ENST00000559873 RGPD2P0DJD1 1756 aa13.46□□□□□ -0.25
USP3-216ENST00000559873 OVOS2A0A0G2JMS6 1433 aa13.46□□□□□ -0.26
USP3-216ENST00000559873 MEGF6O75095 1541 aa13.45□□□□□ -0.26
USP3-216ENST00000559873 PDE3BQ13370 1112 aa13.45□□□□□ -0.26
USP3-216ENST00000559873 SULT6B1Q6IMI4 303 aa13.45□□□□□ -0.26
USP3-216ENST00000559873 EXOC5O00471 708 aa13.44□□□□□ -0.26
USP3-216ENST00000559873 U2AF1L5P0DN76 240 aaPredicted RBP13.44□□□□□ -0.26
USP3-216ENST00000559873 U2AF1Q01081 240 aaKnown RBP eCLIP13.44□□□□□ -0.268e-9■□□□□ 10.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms